(18 nodes) Mitotic Spindle Checkpoint network (Drechmeria coniospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCS_06848	Putative kinetochore protein NDC80. (764 aa)
	DCS_06461	Checkpoint protein kinase. (1135 aa)
	DCS_06221	Uncharacterized protein. (947 aa)
	DCS_06034	Elys. (305 aa)
	DCS_02876	Uncharacterized protein. (292 aa)
	DCS_05242	Noc1p protein. (855 aa)
	DCS_00076	Dynein light intermediate chain. (519 aa)
	DCS_05170	Ser/Thr protein phosphatase family protein. (301 aa)
	DCS_00249	Kinetochore protein nuf2. (462 aa)
	DCS_00340	WD_REPEATS_REGION domain-containing protein. (243 aa)
	DCS_04889	Metallophos domain-containing protein. (390 aa)
	DCS_04442	Uncharacterized protein. (779 aa)
	DCS_04350	Mitotic spindle checkpoint component mad2. (260 aa)
	DCS_04983	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1071 aa)
	DCS_04274	Is centromere binding protein at prophase. (879 aa)
	DCS_03425	Putative EB1-like protein. (239 aa)
	DCS_03347	Nuclear distribution protein nudE. (728 aa)
	DCS_02420	Uncharacterized protein. (633 aa)

Your Current Organism:

Drechmeria coniospora

NCBI taxonomy Id: 98403
Other names: CBS 615.82, D. coniospora, Meria coniospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCS_00076	DCS_00340	A0A151GPA9	A0A151GQ49	Dynein light intermediate chain.	WD_REPEATS_REGION domain-containing protein.	0.616
DCS_00076	DCS_03347	A0A151GPA9	A0A151GGW2	Dynein light intermediate chain.	Nuclear distribution protein nudE.	0.495
DCS_00076	DCS_04350	A0A151GPA9	A0A151GJX7	Dynein light intermediate chain.	Mitotic spindle checkpoint component mad2.	0.673
DCS_00076	DCS_04983	A0A151GPA9	A0A151GLJ5	Dynein light intermediate chain.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.595
DCS_00076	DCS_06461	A0A151GPA9	A0A151GBS1	Dynein light intermediate chain.	Checkpoint protein kinase.	0.611
DCS_00249	DCS_00340	A0A151GPT5	A0A151GQ49	Kinetochore protein nuf2.	WD_REPEATS_REGION domain-containing protein.	0.845
DCS_00249	DCS_02420	A0A151GPT5	A0A151GW00	Kinetochore protein nuf2.	Uncharacterized protein.	0.614
DCS_00249	DCS_02876	A0A151GPT5	A0A151GXG2	Kinetochore protein nuf2.	Uncharacterized protein.	0.999
DCS_00249	DCS_03425	A0A151GPT5	A0A151GH54	Kinetochore protein nuf2.	Putative EB1-like protein.	0.424
DCS_00249	DCS_04350	A0A151GPT5	A0A151GJX7	Kinetochore protein nuf2.	Mitotic spindle checkpoint component mad2.	0.971
DCS_00249	DCS_04983	A0A151GPT5	A0A151GLJ5	Kinetochore protein nuf2.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.921
DCS_00249	DCS_06221	A0A151GPT5	A0A151GB37	Kinetochore protein nuf2.	Uncharacterized protein.	0.929
DCS_00249	DCS_06461	A0A151GPT5	A0A151GBS1	Kinetochore protein nuf2.	Checkpoint protein kinase.	0.975
DCS_00249	DCS_06848	A0A151GPT5	A0A151GCP7	Kinetochore protein nuf2.	Putative kinetochore protein NDC80.	0.999
DCS_00340	DCS_00076	A0A151GQ49	A0A151GPA9	WD_REPEATS_REGION domain-containing protein.	Dynein light intermediate chain.	0.616
DCS_00340	DCS_00249	A0A151GQ49	A0A151GPT5	WD_REPEATS_REGION domain-containing protein.	Kinetochore protein nuf2.	0.845
DCS_00340	DCS_02876	A0A151GQ49	A0A151GXG2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
DCS_00340	DCS_03347	A0A151GQ49	A0A151GGW2	WD_REPEATS_REGION domain-containing protein.	Nuclear distribution protein nudE.	0.687
DCS_00340	DCS_03425	A0A151GQ49	A0A151GH54	WD_REPEATS_REGION domain-containing protein.	Putative EB1-like protein.	0.843
DCS_00340	DCS_04274	A0A151GQ49	A0A151GJJ3	WD_REPEATS_REGION domain-containing protein.	Is centromere binding protein at prophase.	0.836