STRINGSTRING
SGRA_0090 SGRA_0090 SGRA_0117 SGRA_0117 SGRA_0583 SGRA_0583 SGRA_0649 SGRA_0649 rfbD rfbD rfbC rfbC SGRA_1124 SGRA_1124 SGRA_1125 SGRA_1125 SGRA_1340 SGRA_1340 SGRA_1427 SGRA_1427 SGRA_1429 SGRA_1429 SGRA_1430 SGRA_1430 SGRA_1550 SGRA_1550 rfbB rfbB rfbB-2 rfbB-2 ugd ugd manC manC galE galE SGRA_1930 SGRA_1930 galE-2 galE-2 glgA glgA SGRA_2297 SGRA_2297 SGRA_2298 SGRA_2298 asnB asnB rfbA rfbA SGRA_2552 SGRA_2552 SGRA_2553 SGRA_2553 SGRA_2871 SGRA_2871 SGRA_2872 SGRA_2872 SGRA_2873 SGRA_2873 rfbD-2 rfbD-2 rfbA-2 rfbA-2 manB manB rffA rffA SGRA_3842 SGRA_3842 wbpO wbpO SGRA_4055 SGRA_4055 SGRA_4056 SGRA_4056 SGRA_4057 SGRA_4057 SGRA_4058 SGRA_4058 SGRA_4059 SGRA_4059 asnB-2 asnB-2 SGRA_4061 SGRA_4061 SGRA_4062 SGRA_4062 SGRA_4063 SGRA_4063 SGRA_4064 SGRA_4064 SGRA_4065 SGRA_4065 SGRA_4137 SGRA_4137 ycaJ ycaJ SGRA_4140 SGRA_4140 SGRA_4141 SGRA_4141 rsmE rsmE SGRA_4143 SGRA_4143 SGRA_4144 SGRA_4144 SGRA_4145 SGRA_4145 SGRA_4146 SGRA_4146 SGRA_4147 SGRA_4147 SGRA_4148 SGRA_4148 SGRA_4149 SGRA_4149 SGRA_4150 SGRA_4150 SGRA_4151 SGRA_4151
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SGRA_0090COG0110 Acetyltransferase (isoleucine patch superfamily). (189 aa)
SGRA_0117Mannose-1-phosphate guanyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon). (242 aa)
SGRA_0583Xylose isomerase domain-containing protein; COG1082 Sugar phosphate isomerases/epimerases. (277 aa)
SGRA_0649COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases. (478 aa)
rfbDPutative dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (292 aa)
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
SGRA_1124COG0463 Glycosyltransferases involved in cell wall biogenesis. (251 aa)
SGRA_1125COG0463 Glycosyltransferases involved in cell wall biogenesis. (290 aa)
SGRA_1340PfkB domain protein; COG0524 Sugar kinases, ribokinase family. (304 aa)
SGRA_1427Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid. (444 aa)
SGRA_1429Hypothetical protein. (207 aa)
SGRA_1430Hypothetical protein. (77 aa)
SGRA_1550Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid. (487 aa)
rfbBCOG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (351 aa)
rfbB-2dTDP-glucose 4,6-dehydratase, NAD-dependent epimerase/dehydratase-related protein; COG0451 Nucleoside-diphosphate-sugar epimerases. (310 aa)
ugdNucleotide sugar dehydrogenase; COG1004 Predicted UDP-glucose 6-dehydrogenase. (440 aa)
manCCOG0836 Mannose-1-phosphate guanylyltransferase. (364 aa)
galENAD dependent epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases. (330 aa)
SGRA_1930DegT/DnrJ/EryC1/StrS aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (377 aa)
galE-2COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (347 aa)
glgACOG0297 Glycogen synthase. (271 aa)
SGRA_2297Hypothetical protein. (130 aa)
SGRA_2298Hypothetical protein. (46 aa)
asnBCOG0367 Asparagine synthase (glutamine-hydrolyzing). (635 aa)
rfbAGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (289 aa)
SGRA_2552Hypothetical protein. (292 aa)
SGRA_2553GFO/IDH/MocA family oxidoreductase; COG0673 Predicted dehydrogenases and related proteins. (334 aa)
SGRA_2871Hypothetical protein. (45 aa)
SGRA_2872Asparaginase/glutaminase; COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D. (173 aa)
SGRA_2873Hypothetical protein. (33 aa)
rfbD-2COG1091 dTDP-4-dehydrorhamnose reductase. (295 aa)
rfbA-2Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (331 aa)
manBCOG1109 Phosphomannomutase. (463 aa)
rffATDP-4-oxo-6-deoxy-D-glucose transaminase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (379 aa)
SGRA_3842Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (328 aa)
wbpONucleotide sugar dehydrogenase; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (430 aa)
SGRA_4055COG0463 Glycosyltransferases involved in cell wall biogenesis. (299 aa)
SGRA_4056ABC-2 type transporter; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component. (284 aa)
SGRA_4057COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component. (428 aa)
SGRA_40584-alpha-L-fucosyltransferase. (389 aa)
SGRA_4059COG0463 Glycosyltransferases involved in cell wall biogenesis. (321 aa)
asnB-2COG0367 Asparagine synthase (glutamine-hydrolyzing). (622 aa)
SGRA_4061Hypothetical protein. (43 aa)
SGRA_4062Glycosyltransferase 1 protein; COG0438 Glycosyltransferase. (364 aa)
SGRA_4063COG0438 Glycosyltransferase. (367 aa)
SGRA_4064Oxidoreductase domain protein; COG0673 Predicted dehydrogenases and related proteins. (342 aa)
SGRA_4065Hypothetical protein. (63 aa)
SGRA_4137Hypothetical protein. (30 aa)
ycaJRecombination factor protein RarA; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. (424 aa)
SGRA_4140Hypothetical protein. (188 aa)
SGRA_4141Hypothetical protein. (217 aa)
rsmE16S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (238 aa)
SGRA_4143COG0438 Glycosyltransferase. (371 aa)
SGRA_4144COG0463 Glycosyltransferases involved in cell wall biogenesis. (264 aa)
SGRA_4145COG0438 Glycosyltransferase. (400 aa)
SGRA_4146Degt/dnrj/eryc1/strs aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (358 aa)
SGRA_4147Putative hexapeptide transferase family protein; COG0110 Acetyltransferase (isoleucine patch superfamily). (211 aa)
SGRA_4148Hypothetical protein; COG4099 Predicted peptidase. (442 aa)
SGRA_4149Methyltransferase type 11; COG0500 SAM-dependent methyltransferases. (243 aa)
SGRA_4150Phosphoesterase PA-phosphatase related protein; COG0671 Membrane-associated phospholipid phosphatase. (190 aa)
SGRA_4151COG4206 Outer membrane cobalamin receptor protein. (676 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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