Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SGRA_1449 | SGRA_2019 | SGRA_1449 | SGRA_2019 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | UBA/THIF-type NAD/FAD binding protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2. | 0.897 |
| SGRA_1449 | SGRA_2021 | SGRA_1449 | SGRA_2021 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Mov34/MPN/PAD-1 family protein; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | 0.699 |
| SGRA_1449 | SGRA_2318 | SGRA_1449 | SGRA_2318 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Galanin. | 0.656 |
| SGRA_1449 | SGRA_2997 | SGRA_1449 | SGRA_2997 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Galanin. | 0.656 |
| SGRA_1449 | thiC | SGRA_1449 | SGRA_1450 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.952 |
| SGRA_1449 | thiD | SGRA_1449 | SGRA_1453 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.844 |
| SGRA_1449 | thiE | SGRA_1449 | SGRA_1452 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Thiamine-phosphate pyrophosphorylase; COG0352 Thiamine monophosphate synthase. | 0.862 |
| SGRA_1449 | thiE-2 | SGRA_1449 | SGRA_1454 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.757 |
| SGRA_1449 | thiG | SGRA_1449 | SGRA_1455 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.993 |
| SGRA_1449 | thiH | SGRA_1449 | SGRA_1650 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes. | 0.819 |
| SGRA_1451 | SGRA_1456 | SGRA_1451 | SGRA_1456 | Hypothetical protein. | Hypothetical protein. | 0.482 |
| SGRA_1451 | thiD | SGRA_1451 | SGRA_1453 | Hypothetical protein. | COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.567 |
| SGRA_1451 | thiE | SGRA_1451 | SGRA_1452 | Hypothetical protein. | Thiamine-phosphate pyrophosphorylase; COG0352 Thiamine monophosphate synthase. | 0.567 |
| SGRA_1451 | thiE-2 | SGRA_1451 | SGRA_1454 | Hypothetical protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.567 |
| SGRA_1451 | thiG | SGRA_1451 | SGRA_1455 | Hypothetical protein. | Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.563 |
| SGRA_1456 | SGRA_1451 | SGRA_1456 | SGRA_1451 | Hypothetical protein. | Hypothetical protein. | 0.482 |
| SGRA_1456 | thiD | SGRA_1456 | SGRA_1453 | Hypothetical protein. | COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.647 |
| SGRA_1456 | thiE | SGRA_1456 | SGRA_1452 | Hypothetical protein. | Thiamine-phosphate pyrophosphorylase; COG0352 Thiamine monophosphate synthase. | 0.647 |
| SGRA_1456 | thiE-2 | SGRA_1456 | SGRA_1454 | Hypothetical protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.647 |
| SGRA_1456 | thiG | SGRA_1456 | SGRA_1455 | Hypothetical protein. | Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.651 |
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