18 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGRA_0400	AAA ATPase. (287 aa)
	SGRA_0401	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence. (532 aa)
	SGRA_0402	Hypothetical protein. (303 aa)
	SGRA_0403	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (440 aa)
	SGRA_0404	Hypothetical protein. (153 aa)
	SGRA_0405	Hypothetical protein. (34 aa)
	SGRA_1895	Hypothetical protein. (303 aa)
	SGRA_2571	Hypothetical protein. (217 aa)
	SGRA_2572	SMC domain protein; COG4637 Predicted ATPase. (454 aa)
	SGRA_2983	COG1403 Restriction endonuclease. (217 aa)
	SGRA_2984	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (399 aa)
	SGRA_3167	Hypothetical protein. (318 aa)
	SGRA_3168	Hypothetical protein. (70 aa)
	SGRA_3411	Hypothetical protein. (306 aa)
	SGRA_3869	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (433 aa)
	SGRA_3870	Hypothetical protein; COG0481 Membrane GTPase LepA. (299 aa)
	SGRA_4130	Hypothetical protein. (235 aa)
	SGRA_4131	ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (751 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SGRA_0400	SGRA_0401	AAA ATPase.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.779
SGRA_0400	SGRA_0402	AAA ATPase.	Hypothetical protein.	0.500
SGRA_0400	SGRA_0403	AAA ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.421
SGRA_0401	SGRA_0400	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.779
SGRA_0401	SGRA_0402	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.500
SGRA_0401	SGRA_0403	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0401	SGRA_1895	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.621
SGRA_0401	SGRA_2572	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG4637 Predicted ATPase.	0.692
SGRA_0401	SGRA_3167	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.624
SGRA_0401	SGRA_3411	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.618
SGRA_0401	SGRA_4130	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.755
SGRA_0402	SGRA_0400	Hypothetical protein.	AAA ATPase.	0.500
SGRA_0402	SGRA_0401	Hypothetical protein.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.500
SGRA_0402	SGRA_0403	Hypothetical protein.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.804
SGRA_0402	SGRA_0404	Hypothetical protein.	Hypothetical protein.	0.539
SGRA_0402	SGRA_0405	Hypothetical protein.	Hypothetical protein.	0.510
SGRA_0403	SGRA_0400	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.421
SGRA_0403	SGRA_0401	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0403	SGRA_0402	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.804
SGRA_0403	SGRA_0404	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	Hypothetical protein.	0.539