STRINGSTRING
SGRA_0196 SGRA_0196 SGRA_0197 SGRA_0197 SGRA_0198 SGRA_0198 SGRA_0726 SGRA_0726 SGRA_0727 SGRA_0727 rpoE-2 rpoE-2 SGRA_0729 SGRA_0729 SGRA_0731 SGRA_0731 SGRA_1034 SGRA_1034 rpoE-3 rpoE-3 SGRA_1036 SGRA_1036 rpoE-4 rpoE-4 SGRA_1050 SGRA_1050 SGRA_1613 SGRA_1613 rpoE-5 rpoE-5 SGRA_1615 SGRA_1615 SGRA_1616 SGRA_1616 SGRA_1617 SGRA_1617 rpoE-6 rpoE-6 SGRA_1760 SGRA_1760 SGRA_1761 SGRA_1761 SGRA_1762 SGRA_1762 SGRA_1763 SGRA_1763 rpoE-7 rpoE-7 SGRA_1765 SGRA_1765 SGRA_1767 SGRA_1767 SGRA_2192 SGRA_2192 rpoE-8 rpoE-8 SGRA_2468 SGRA_2468 rpoE-9 rpoE-9 SGRA_2471 SGRA_2471 SGRA_2472 SGRA_2472 SGRA_3118 SGRA_3118 SGRA_3119 SGRA_3119 SGRA_3120 SGRA_3120 marC marC SGRA_3122 SGRA_3122 SGRA_3125 SGRA_3125 SGRA_4095 SGRA_4095
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SGRA_0196Hypothetical protein. (540 aa)
SGRA_0197RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
SGRA_0198COG4399 Uncharacterized protein conserved in bacteria. (418 aa)
SGRA_0726COG3210 Large exoproteins involved in heme utilization or adhesion. (529 aa)
SGRA_0727Hypothetical protein. (418 aa)
rpoE-2RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
SGRA_0729Hypothetical protein. (59 aa)
SGRA_0731Hypothetical protein. (41 aa)
SGRA_1034Hypothetical protein. (65 aa)
rpoE-3RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa)
SGRA_1036Hypothetical protein. (446 aa)
rpoE-4RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
SGRA_1050Hypothetical protein. (558 aa)
SGRA_1613Hypothetical protein. (82 aa)
rpoE-5COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa)
SGRA_1615Hypothetical protein. (76 aa)
SGRA_1616Hypothetical protein. (41 aa)
SGRA_1617Hypothetical protein. (120 aa)
rpoE-6RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa)
SGRA_1760OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (833 aa)
SGRA_1761Hypothetical protein. (393 aa)
SGRA_1762TM helix repeat-containing protein; COG0668 Small-conductance mechanosensitive channel. (280 aa)
SGRA_1763Hypothetical protein. (63 aa)
rpoE-7RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
SGRA_1765Hypothetical protein. (43 aa)
SGRA_1767Hypothetical protein. (78 aa)
SGRA_2192Endonuclease/exonuclease/phosphatase family protein; COG3021 Uncharacterized protein conserved in bacteria. (364 aa)
rpoE-8RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
SGRA_2468Hypothetical protein. (54 aa)
rpoE-9COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
SGRA_2471Hypothetical protein. (213 aa)
SGRA_2472Hypothetical protein. (173 aa)
SGRA_3118Alpha-2-macroglobulin domain protein; COG2373 Large extracellular alpha-helical protein. (1888 aa)
SGRA_3119Hypothetical protein. (44 aa)
SGRA_3120Hypothetical protein. (71 aa)
marCMultiple antibiotic resistance (MarC)-related protein; COG2095 Multiple antibiotic transporter. (189 aa)
SGRA_3122Hypothetical protein. (32 aa)
SGRA_3125Hypothetical protein. (381 aa)
SGRA_4095Hypothetical protein. (358 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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