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fbaB fbaB scoA scoA scoB scoB atoB atoB pccB pccB rpiB rpiB fabD fabD SGRA_0550 SGRA_0550 pckA pckA gloA gloA eno eno accD accD prpE prpE icd icd lpd lpd SGRA_0746 SGRA_0746 atoB-2 atoB-2 SGRA_0820 SGRA_0820 mdh mdh fbp fbp gapA gapA crt crt SGRA_1245 SGRA_1245 SGRA_1247 SGRA_1247 talA talA pdhA pdhA birA birA SGRA_1401 SGRA_1401 fabZ fabZ fabI fabI bcsA bcsA pcaF pcaF prsA prsA fumC fumC fadD fadD deoC deoC SGRA_1806 SGRA_1806 sucA sucA SGRA_1892 SGRA_1892 SGRA_1893 SGRA_1893 SGRA_1894 SGRA_1894 icmF icmF SGRA_1936 SGRA_1936 pfk pfk sucD sucD tktA tktA tktA-2 tktA-2 SGRA_2079 SGRA_2079 SGRA_2080 SGRA_2080 fabI-2 fabI-2 SGRA_2222 SGRA_2222 SGRA_2223 SGRA_2223 sdhC sdhC sdhA sdhA sdhB sdhB SGRA_2313 SGRA_2313 gltA gltA SGRA_2469 SGRA_2469 fadN fadN fadA fadA fabF fabF fadJ fadJ pyk pyk pdhB pdhB SGRA_2576 SGRA_2576 SGRA_2632 SGRA_2632 accB accB accC accC argK argK sucB sucB fabH fabH icd-2 icd-2 SGRA_2823 SGRA_2823 pccB-2 pccB-2 paaH paaH fabG fabG SGRA_2923 SGRA_2923 hmgL hmgL fadD-2 fadD-2 fabH-2 fabH-2 gcdH gcdH tpiA tpiA SGRA_3003 SGRA_3003 aceF aceF fixB fixB fixA fixA SGRA_3157 SGRA_3157 mtnU mtnU gpm gpm accA accA manA manA SGRA_3390 SGRA_3390 SGRA_3391 SGRA_3391 ppk ppk acs acs rpe rpe SGRA_3529 SGRA_3529 fabG-2 fabG-2 acnA acnA sucC sucC sucB-2 sucB-2 aspB aspB SGRA_3772 SGRA_3772 sfcA sfcA SGRA_3861 SGRA_3861 pgk pgk gapA-2 gapA-2 SGRA_4028 SGRA_4028 lpd-2 lpd-2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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fbaBCOG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes. (350 aa)
scoACOG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (231 aa)
scoBCOG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (219 aa)
atoBacetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
pccBCOG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (501 aa)
rpiBCOG0698 Ribose 5-phosphate isomerase RpiB. (149 aa)
fabDCOG0331 (acyl-carrier-protein) S-malonyltransferase. (293 aa)
SGRA_0550COG0436 Aspartate/tyrosine/aromatic aminotransferase. (373 aa)
pckAPhosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
gloAmethylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases. (133 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
accDacetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (283 aa)
prpEprpE protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. (627 aa)
icdCOG0473 Isocitrate/isopropylmalate dehydrogenase. (481 aa)
lpdCOG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes. (472 aa)
SGRA_0746Putative zinc-type alcohol dehydrogenase-like protein; COG1064 Zn-dependent alcohol dehydrogenases. (335 aa)
atoB-2COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
SGRA_0820COG0724 RNA-binding proteins (RRM domain). (122 aa)
mdhMalate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (374 aa)
fbpCOG0158 Fructose-1,6-bisphosphatase. (327 aa)
gapACOG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (495 aa)
crtCOG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
SGRA_1245Alcohol dehydrogenase zinc-binding domain protein; COG1064 Zn-dependent alcohol dehydrogenases. (350 aa)
SGRA_1247Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase. (170 aa)
talAPutative translaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (218 aa)
pdhAPyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (335 aa)
birACOG0340 Biotin-(acetyl-CoA carboxylase) ligase. (272 aa)
SGRA_1401Beta-ketoacyl synthase; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (427 aa)
fabZ(3R)-hydroxymyristoyl-[acyl-carrier- protein]dehydratase; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases. (153 aa)
fabIShort-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (261 aa)
bcsAChalcone and stilbene synthase domain protein; COG3424 Predicted naringenin-chalcone synthase. (352 aa)
pcaFBeta-ketoadipyl CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
prsARibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (320 aa)
fumCFumarate hydratase, class ii; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa)
fadDCOG1022 Long-chain acyl-CoA synthetases (AMP-forming). (607 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (220 aa)
SGRA_1806COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. (713 aa)
sucACOG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes. (922 aa)
SGRA_1892COG2207 AraC-type DNA-binding domain-containing proteins. (296 aa)
SGRA_1893COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. (506 aa)
SGRA_1894COG3564 Uncharacterized protein conserved in bacteria. (119 aa)
icmFmethylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. (1119 aa)
SGRA_19363-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit. (665 aa)
pfk6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (325 aa)
sucDsuccinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (293 aa)
tktACOG3959 Transketolase, N-terminal subunit. (281 aa)
tktA-2COG3958 Transketolase, C-terminal subunit. (317 aa)
SGRA_2079Hypothetical protein. (74 aa)
SGRA_2080Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (233 aa)
fabI-2COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH). (294 aa)
SGRA_2222WD-40 repeat protein; COG2319 FOG: WD40 repeat. (625 aa)
SGRA_2223COG1960 Acyl-CoA dehydrogenases. (598 aa)
sdhCCOG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (207 aa)
sdhACOG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (667 aa)
sdhBCOG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit. (257 aa)
SGRA_2313Transketolase domain protein; COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit. (803 aa)
gltACOG0372 Citrate synthase; Belongs to the citrate synthase family. (440 aa)
SGRA_2469COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. (517 aa)
fadNCOG1250 3-hydroxyacyl-CoA dehydrogenase. (787 aa)
fadACOG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)
fabF3-oxoacyl-(acyl-carrier-protein) synthase ii; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (416 aa)
fadJ3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (704 aa)
pykCOG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. (477 aa)
pdhBTransketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (328 aa)
SGRA_2576COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. (361 aa)
SGRA_2632COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family. (471 aa)
accBBiotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (171 aa)
accCacetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (456 aa)
argKArginine/ornithine transport system ATPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family. (360 aa)
sucB2-oxoglutarate dehydrogenase, e2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (420 aa)
fabH3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family. (352 aa)
icd-2COG0538 Isocitrate dehydrogenases. (399 aa)
SGRA_2823COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (553 aa)
pccB-2COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (541 aa)
paaHCOG1250 3-hydroxyacyl-CoA dehydrogenase. (296 aa)
fabG3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (233 aa)
SGRA_2923COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (473 aa)
hmgLhydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases. (276 aa)
fadD-2COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (568 aa)
fabH-2COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III. (358 aa)
gcdHCOG1960 Acyl-CoA dehydrogenases. (405 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (257 aa)
SGRA_3003COG1960 Acyl-CoA dehydrogenases. (599 aa)
aceFPyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (417 aa)
fixBCOG2025 Electron transfer flavoprotein, alpha subunit. (319 aa)
fixACOG2086 Electron transfer flavoprotein, beta subunit. (212 aa)
SGRA_3157Lipase family protein; COG3675 Predicted lipase. (422 aa)
mtnUPutative NAD(P)-binding amidase-type enzyme with nitrilase/N-carbamoyl-D-aminoacid amidohydrolase; COG0388 Predicted amidohydrolase. (253 aa)
gpmPhosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (510 aa)
accAacetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (319 aa)
manABifunctional phosphoglucose/phosphomannose isomerase; COG0166 Glucose-6-phosphate isomerase. (330 aa)
SGRA_3390Methyltransferase type 12; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase. (235 aa)
SGRA_3391Monooxygenase FAD-binding protein; COG0644 Dehydrogenases (flavoproteins). (388 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (695 aa)
acsAcetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. (633 aa)
rpeCOG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (221 aa)
SGRA_3529COG1960 Acyl-CoA dehydrogenases. (388 aa)
fabG-23-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)
acnAAconitate hydratase; COG1048 Aconitase A. (759 aa)
sucCsuccinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (405 aa)
sucB-2Catalytic domain of components of various dehydrogenase complexes; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes. (441 aa)
aspBAminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (399 aa)
SGRA_3772Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (497 aa)
sfcAMalate dehydrogenase; COG0281 Malic enzyme. (403 aa)
SGRA_3861NADP-dependent L-serine/L-allo-threonine dehydrogenase; COG4221 Short-chain alcohol dehydrogenase of unknown specificity. (737 aa)
pgkCOG0126 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (403 aa)
gapA-2Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (334 aa)
SGRA_4028COG1960 Acyl-CoA dehydrogenases. (613 aa)
lpd-2COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes. (470 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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