STRINGSTRING
scoA scoA scoB scoB atoB atoB atoB-2 atoB-2 crt crt pcaF pcaF SGRA_2223 SGRA_2223 fadN fadN fadA fadA fadJ fadJ paaH paaH gcdH gcdH SGRA_3003 SGRA_3003 fixB fixB fixA fixA SGRA_3529 SGRA_3529 SGRA_4028 SGRA_4028
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
scoACOG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (231 aa)
scoBCOG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (219 aa)
atoBacetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
atoB-2COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
crtCOG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
pcaFBeta-ketoadipyl CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SGRA_2223COG1960 Acyl-CoA dehydrogenases. (598 aa)
fadNCOG1250 3-hydroxyacyl-CoA dehydrogenase. (787 aa)
fadACOG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)
fadJ3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (704 aa)
paaHCOG1250 3-hydroxyacyl-CoA dehydrogenase. (296 aa)
gcdHCOG1960 Acyl-CoA dehydrogenases. (405 aa)
SGRA_3003COG1960 Acyl-CoA dehydrogenases. (599 aa)
fixBCOG2025 Electron transfer flavoprotein, alpha subunit. (319 aa)
fixACOG2086 Electron transfer flavoprotein, beta subunit. (212 aa)
SGRA_3529COG1960 Acyl-CoA dehydrogenases. (388 aa)
SGRA_4028COG1960 Acyl-CoA dehydrogenases. (613 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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