15 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGRA_0403	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (440 aa)
	SGRA_4131	ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (751 aa)
	SGRA_3894	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (441 aa)
	apaG	Co2+/Mg2+ efflux protein ApaG; COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport. (129 aa)
	SGRA_3869	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (433 aa)
	SGRA_3606	Hypothetical protein. (429 aa)
	SGRA_3404	ATPase-like protein; COG4637 Predicted ATPase. (354 aa)
	SGRA_3257	Hypothetical protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components. (371 aa)
	SGRA_3038	Hypothetical protein; COG1403 Restriction endonuclease. (319 aa)
	SGRA_3037	SMC domain protein; COG1122 ABC-type cobalt transport system, ATPase component. (620 aa)
	SGRA_2984	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (399 aa)
	SGRA_2901	Hypothetical protein; COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA. (678 aa)
	SGRA_2572	SMC domain protein; COG4637 Predicted ATPase. (454 aa)
	SGRA_0401	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence. (532 aa)
	SGRA_0400	AAA ATPase. (287 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SGRA_0400	SGRA_0401	AAA ATPase.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.779
SGRA_0400	SGRA_0403	AAA ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.421
SGRA_0401	SGRA_0400	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.779
SGRA_0401	SGRA_0403	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0401	SGRA_2572	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG4637 Predicted ATPase.	0.692
SGRA_0401	SGRA_3404	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	ATPase-like protein; COG4637 Predicted ATPase.	0.530
SGRA_0403	SGRA_0400	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.421
SGRA_0403	SGRA_0401	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0403	SGRA_2572	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG4637 Predicted ATPase.	0.412
SGRA_0403	SGRA_2984	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.515
SGRA_0403	SGRA_3037	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG1122 ABC-type cobalt transport system, ATPase component.	0.525
SGRA_0403	SGRA_3869	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.514
SGRA_0403	SGRA_3894	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.475
SGRA_0403	SGRA_4131	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.420
SGRA_2572	SGRA_0401	SMC domain protein; COG4637 Predicted ATPase.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.692
SGRA_2572	SGRA_0403	SMC domain protein; COG4637 Predicted ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.412
SGRA_2572	SGRA_2984	SMC domain protein; COG4637 Predicted ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.692
SGRA_2572	SGRA_3037	SMC domain protein; COG4637 Predicted ATPase.	SMC domain protein; COG1122 ABC-type cobalt transport system, ATPase component.	0.691
SGRA_2572	SGRA_3869	SMC domain protein; COG4637 Predicted ATPase.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.690
SGRA_2572	SGRA_3894	SMC domain protein; COG4637 Predicted ATPase.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.698