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| | dnaA | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (501 aa) |
| | SGRA_0043 | Type 4 fimbriae expression regulatory protein pilR; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (549 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (804 aa) |
| | SGRA_0113 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | SGRA_0118 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (554 aa) |
| | SGRA_0152 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (101 aa) |
| | SGRA_0177 | Two component transcriptional regulator, LytTR family protein; COG3279 Response regulator of the LytR/AlgR family. (234 aa) |
| | SGRA_0197 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa) |
| | phoB1 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (237 aa) |
| | cas1 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (321 aa) |
| | hsdR | Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (936 aa) |
| | SGRA_0310 | COG1733 Predicted transcriptional regulators. (113 aa) |
| | SGRA_0347 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | SGRA_0380 | Pseudouridine synthase, Rsu; COG3210 Large exoproteins involved in heme utilization or adhesion. (110 aa) |
| | SGRA_0390 | Response regulator receiver protein. (307 aa) |
| | SGRA_0410 | Transcriptional regulator, Crp/Fnr family protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (149 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (372 aa) |
| | SGRA_0495 | Two component transcriptional regulator, LytTR family protein; COG3279 Response regulator of the LytR/AlgR family. (239 aa) |
| | xerD | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (303 aa) |
| | SGRA_0534 | Transposase, mutator type; Required for the transposition of the insertion element. (362 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (858 aa) |
| | SGRA_0546 | Putative transcriptional regulator, Crp/Fnr family; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (190 aa) |
| | SGRA_0580 | Hypothetical protein; COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (153 aa) |
| | degS | Multi-sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain. (1047 aa) |
| | narL | Two component transcriptional regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (219 aa) |
| | dpx | PHP domain protein; COG1796 DNA polymerase IV (family X). (556 aa) |
| | rpoE | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa) |
| | SGRA_0629 | COG2932 Predicted transcriptional regulator; Belongs to the peptidase S24 family. (241 aa) |
| | rpoE-2 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa) |
| | SGRA_0735 | Penicillinase repressor; COG3682 Predicted transcriptional regulator. (108 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (839 aa) |
| | SGRA_0764 | Putative two component, sigma54 specific, transcriptional regulator, Fis family protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (421 aa) |
| | parB | Putative ParB-like chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family. (359 aa) |
| | SGRA_0769 | Hypothetical protein. (356 aa) |
| | rpoD | RNA polymerase, sigma 70 subunit, RpoD subfamily protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (227 aa) |
| | uvrD-2 | COG0210 Superfamily I DNA and RNA helicases. (759 aa) |
| | asnC | Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (160 aa) |
| | rpoE-11 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa) |
| | SGRA_4160 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | ycaJ | Recombination factor protein RarA; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. (424 aa) |
| | hsdM-3 | COG0286 Type I restriction-modification system methyltransferase subunit. (780 aa) |
| | hsdS-3 | Type I restriction-modification system; COG0732 Restriction endonuclease S subunits. (430 aa) |
| | SGRA_4128 | COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (1036 aa) |
| | smf | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. (365 aa) |
| | smc | Chromosome segregation protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1173 aa) |
| | SGRA_4027 | Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (292 aa) |
| | SGRA_3957 | Putative AraC family transcriptional regulator; COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain. (299 aa) |
| | SGRA_3913 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (554 aa) |
| | hsdR-3 | Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1070 aa) |
| | hsdS-2 | COG0732 Restriction endonuclease S subunits. (385 aa) |
| | hsdM-2 | COG0286 Type I restriction-modification system methyltransferase subunit. (512 aa) |
| | SGRA_3889 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | SGRA_3882 | COG1510 Predicted transcriptional regulators; Belongs to the GbsR family. (218 aa) |
| | SGRA_3864 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (554 aa) |
| | SGRA_3736 | Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases. (1481 aa) |
| | SGRA_3694 | Putative lipoprotein. (291 aa) |
| | SGRA_3663 | Hypothetical protein. (270 aa) |
| | SGRA_3662 | Hypothetical protein. (278 aa) |
| | SGRA_3658 | COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family. (250 aa) |
| | comM | Mg chelatase, subunit chli; COG0606 Predicted ATPase with chaperone activity. (518 aa) |
| | hsdS | Restriction modification system DNA specificity domain protein; COG0732 Restriction endonuclease S subunits. (383 aa) |
| | SGRA_3580 | COG3666 Transposase and inactivated derivatives. (282 aa) |
| | SGRA_3579 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (236 aa) |
| | SGRA_3570 | ABC-type transporter ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (622 aa) |
| | phoB1-2 | Two component transcriptional regulator, winged helix family protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa) |
| | sms | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (464 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (927 aa) |
| | pilH | Two-component system response regulator; COG0784 FOG: CheY-like receiver. (122 aa) |
| | SGRA_3417 | Type I restriction modification enzyme protein S; COG0732 Restriction endonuclease S subunits. (364 aa) |
| | hsdM | COG0286 Type I restriction-modification system methyltransferase subunit. (501 aa) |
| | SGRA_3413 | COG1943 Transposase and inactivated derivatives. (142 aa) |
| | hsdR-2 | COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (1132 aa) |
| | SGRA_3410 | COG1555 DNA uptake protein and related DNA-binding proteins. (283 aa) |
| | hslR | COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog). (139 aa) |
| | SGRA_3372 | Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (303 aa) |
| | rpoE-10 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa) |
| | holA | COG1466 DNA polymerase III, delta subunit. (356 aa) |
| | SGRA_3261 | Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator. (212 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (658 aa) |
| | rpoN | COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog. (539 aa) |
| | recB | UvrD/REP helicase; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). (1091 aa) |
| | cheY | Chemotaxis response regulator (CheY); COG0784 FOG: CheY-like receiver. (127 aa) |
| | SGRA_3208 | Two component transcriptional regulator, LuxR family; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (175 aa) |
| | SGRA_3207 | Transcriptional regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (239 aa) |
| | SGRA_3173 | Regulatory protein tetr; COG1309 Transcriptional regulator. (202 aa) |
| | SGRA_3152 | COG3210 Large exoproteins involved in heme utilization or adhesion. (103 aa) |
| | SGRA_3151 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (202 aa) |
| | SGRA_3132 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | SGRA_3008 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | ftsK | COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (850 aa) |
| | SGRA_2982 | COG1555 DNA uptake protein and related DNA-binding proteins. (689 aa) |
| | SGRA_2981 | Hypothetical protein. (286 aa) |
| | SGRA_2979 | Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (288 aa) |
| | lrp | Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (165 aa) |
| | mutL | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (622 aa) |
| | SGRA_2902 | Hypothetical protein. (323 aa) |
| | troR | Iron dependent repressor; COG1321 Mn-dependent transcriptional regulator. (223 aa) |
| | SGRA_2790 | Hypothetical protein. (1159 aa) |
| | SGRA_2735 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | dnaB | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (510 aa) |
| | sprA | Gliding motility protein SprA. (2512 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (203 aa) |
| | SGRA_2653 | Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator. (195 aa) |
| | mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (800 aa) |
| | xthA | Exodeoxyribonuclease III Xth; COG0708 Exonuclease III. (257 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (341 aa) |
| | hupB-2 | COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family. (106 aa) |
| | SGRA_2546 | DNA-directed RNA polymerase, omega subunit. (113 aa) |
| | SGRA_2540 | Hypothetical protein. (121 aa) |
| | SGRA_2500 | Sigma54 specific transcriptional regulator, Fis family protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (433 aa) |
| | SGRA_2480 | COG1309 Transcriptional regulator. (194 aa) |
| | rpoE-9 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | SGRA_2417 | Helix-turn-helix domain protein; COG2932 Predicted transcriptional regulator; Belongs to the peptidase S24 family. (254 aa) |
| | SGRA_2416 | Transcriptional regulator, XRE family; COG1813 Predicted transcription factor, homolog of eukaryotic MBF1. (105 aa) |
| | uvrA-2 | UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (930 aa) |
| | rpoE-8 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa) |
| | SGRA_2395 | ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa) |
| | pal-3 | OmpA/MotB domain-containing protein; COG0457 FOG: TPR repeat. (675 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1420 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1276 aa) |
| | nusG | NusG antitermination factor; Participates in transcription elongation, termination and antitermination. (180 aa) |
| | SGRA_2290 | N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit. (629 aa) |
| | SGRA_2288 | ADP-ribosylation/crystallin J1. (393 aa) |
| | SGRA_2285 | RNA polymerase sigma factor, sigma-70 family protein; COG1191 DNA-directed RNA polymerase specialized sigma subunit. (199 aa) |
| | SGRA_2251 | DNA mismatch repair protein MutS domain-containing protein; COG0249 Mismatch repair ATPase (MutS family). (589 aa) |
| | ssb | COG0629 Single-stranded DNA-binding protein. (162 aa) |
| | SGRA_2172 | Hypothetical protein. (1718 aa) |
| | SGRA_2155 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (554 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (884 aa) |
| | SGRA_2114 | Transcriptional regulator, BadM/Rrf2 family protein; COG1959 Predicted transcriptional regulator. (145 aa) |
| | SGRA_2093 | Two component transcriptional regulator, LuxR family protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (289 aa) |
| | greA | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (160 aa) |
| | SGRA_2039 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (216 aa) |
| | SGRA_2030 | Secreted protein. (180 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (372 aa) |
| | SGRA_2000 | Hypothetical protein. (356 aa) |
| | SGRA_1972 | Chromosome segregation ATPase-like protein. (1125 aa) |
| | SGRA_1917 | Transcriptional regulator, XRE family; COG1396 Predicted transcriptional regulators. (149 aa) |
| | SGRA_1902 | Hypothetical protein. (421 aa) |
| | SGRA_1892 | COG2207 AraC-type DNA-binding domain-containing proteins. (296 aa) |
| | dnaN | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (332 aa) |
| | SGRA_1788 | Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators. (294 aa) |
| | xerC | Integrase family protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (299 aa) |
| | rpoE-7 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (680 aa) |
| | SGRA_1751 | Hypothetical protein. (256 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (683 aa) |
| | SGRA_1732 | RNA polymerase, sigma-E factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa) |
| | fnr | CRP family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (223 aa) |
| | SGRA_1671 | Transposase, mutator type; COG3328 Transposase and inactivated derivatives. (398 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1122 aa) |
| | rpoS | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa) |
| | rpoE-6 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa) |
| | rpoE-5 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa) |
| | recQ-2 | COG0514 Superfamily II DNA helicase. (737 aa) |
| | SGRA_1554 | Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (281 aa) |
| | SGRA_1541 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (241 aa) |
| | parE | DNA topoisomerase IV subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. (616 aa) |
| | SGRA_1443 | Transcriptional regulator; COG2812 DNA polymerase III, gamma/tau subunits; Belongs to the peptidase S24 family. (280 aa) |
| | SGRA_1411 | Transposase, mutator type; Required for the transposition of the insertion element. (398 aa) |
| | SGRA_1375 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa) |
| | SGRA_1366 | Chromosome segregation ATPase-like protein; COG3210 Large exoproteins involved in heme utilization or adhesion. (109 aa) |
| | SGRA_1355 | Smr protein/MutS2; COG1193 Mismatch repair ATPase (MutS family). (365 aa) |
| | uvrC | Uvrabc system protein c; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (603 aa) |
| | SGRA_1322 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | SGRA_1288 | Transcriptional regulator, TetR family; COG1309 Transcriptional regulator. (228 aa) |
| | hupB | DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (108 aa) |
| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (593 aa) |
| | pleC1 | Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase. (678 aa) |
| | SGRA_1250 | Type 4 fimbriae expression regulatory protein PilR; COG3283 Transcriptional regulator of aromatic amino acids metabolism. (300 aa) |
| | SGRA_1246 | AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (280 aa) |
| | SGRA_1244 | Hypothetical protein. (237 aa) |
| | SGRA_1191 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | SGRA_1184 | COG2963 Transposase and inactivated derivatives. (140 aa) |
| | SGRA_1158 | Two component LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (231 aa) |
| | SGRA_1132 | Two component, sigma54 specific, Fis family transcriptional regulator; COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain. (534 aa) |
| | rpoE-4 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa) |
| | SGRA_1048 | Transcriptional regulator, XRE family protein; COG2932 Predicted transcriptional regulator; Belongs to the peptidase S24 family. (246 aa) |
| | rpoE-3 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa) |
| | SGRA_1023 | RNA-directed DNA polymerase; COG3344 Retron-type reverse transcriptase. (554 aa) |
| | recQ | ATP-dependent DNA helicase, RecQ family protein; COG0514 Superfamily II DNA helicase. (2930 aa) |
| | SGRA_0911 | tetR family regulatory protein; COG1309 Transcriptional regulator. (211 aa) |
| | parC | COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit. (839 aa) |
| | SGRA_0891 | Transposase, is4 family protein; COG3666 Transposase and inactivated derivatives. (554 aa) |
| | mraZ | MraZ protein; COG2001 Uncharacterized protein conserved in bacteria; Belongs to the MraZ family. (153 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (876 aa) |
| | SGRA_0830 | Hypothetical protein. (239 aa) |
