STRINGSTRING
oxyR oxyR rpoE-11 rpoE-11 SGRA_4073 SGRA_4073 SGRA_4027 SGRA_4027 SGRA_3957 SGRA_3957 oxyR-3 oxyR-3 oxyR-2 oxyR-2 SGRA_3663 SGRA_3663 SGRA_3662 SGRA_3662 SGRA_3560 SGRA_3560 SGRA_3372 SGRA_3372 rpoE-10 rpoE-10 rpoN rpoN fur-2 fur-2 SGRA_2979 SGRA_2979 troR troR SGRA_2699 SGRA_2699 SGRA_2648 SGRA_2648 SGRA_2521 SGRA_2521 rpoE-9 rpoE-9 SGRA_2415 SGRA_2415 rpoE-8 rpoE-8 SGRA_2395 SGRA_2395 SGRA_2285 SGRA_2285 SGRA_2114 SGRA_2114 SGRA_1937 SGRA_1937 SGRA_1892 SGRA_1892 rpoE-7 rpoE-7 SGRA_1732 SGRA_1732 rpoS rpoS rpoE-6 rpoE-6 rpoE-5 rpoE-5 SGRA_1554 SGRA_1554 SGRA_1467 SGRA_1467 SGRA_1412 SGRA_1412 SGRA_1410 SGRA_1410 SGRA_1375 SGRA_1375 pleC1 pleC1 SGRA_1246 SGRA_1246 nusA nusA rpoE-4 rpoE-4 rpoE-3 rpoE-3 mraZ mraZ rpoD rpoD rpoE-2 rpoE-2 SGRA_0705 SGRA_0705 fur fur rpoE rpoE degS degS SGRA_0518 SGRA_0518 SGRA_0197 SGRA_0197 SGRA_0144 SGRA_0144
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oxyRRedox-sensitive transcriptional activator OxyR; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa)
rpoE-11COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa)
SGRA_4073Hypothetical protein; COG2378 Predicted transcriptional regulator. (338 aa)
SGRA_4027Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (292 aa)
SGRA_3957Putative AraC family transcriptional regulator; COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain. (299 aa)
oxyR-3Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (315 aa)
oxyR-2Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (314 aa)
SGRA_3663Hypothetical protein. (270 aa)
SGRA_3662Hypothetical protein. (278 aa)
SGRA_3560COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (291 aa)
SGRA_3372Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (303 aa)
rpoE-10RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
rpoNCOG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog. (539 aa)
fur-2Fur family transcriptional regulator protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (139 aa)
SGRA_2979Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (288 aa)
troRIron dependent repressor; COG1321 Mn-dependent transcriptional regulator. (223 aa)
SGRA_2699COG1846 Transcriptional regulators. (216 aa)
SGRA_2648COG0640 Predicted transcriptional regulators. (99 aa)
SGRA_2521Hypothetical protein; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit. (105 aa)
rpoE-9COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
SGRA_2415Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (151 aa)
rpoE-8RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
SGRA_2395ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
SGRA_2285RNA polymerase sigma factor, sigma-70 family protein; COG1191 DNA-directed RNA polymerase specialized sigma subunit. (199 aa)
SGRA_2114Transcriptional regulator, BadM/Rrf2 family protein; COG1959 Predicted transcriptional regulator. (145 aa)
SGRA_1937COG0506 Proline dehydrogenase. (362 aa)
SGRA_1892COG2207 AraC-type DNA-binding domain-containing proteins. (296 aa)
rpoE-7RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
SGRA_1732RNA polymerase, sigma-E factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
rpoSPutative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa)
rpoE-6RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa)
rpoE-5COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa)
SGRA_1554Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (281 aa)
SGRA_1467Regulatory protein ArsR; COG0640 Predicted transcriptional regulators. (112 aa)
SGRA_1412Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (78 aa)
SGRA_1410Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (111 aa)
SGRA_1375RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa)
pleC1Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase. (678 aa)
SGRA_1246AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (280 aa)
nusATranscription elongation factor NusA; Participates in both transcription termination and antitermination. (438 aa)
rpoE-4RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
rpoE-3RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa)
mraZMraZ protein; COG2001 Uncharacterized protein conserved in bacteria; Belongs to the MraZ family. (153 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD subfamily protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa)
rpoE-2RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
SGRA_0705Organic hydroperoxide resistance transcriptionalregulator; COG1846 Transcriptional regulators. (146 aa)
furFerric-uptake regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (154 aa)
rpoERNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
degSMulti-sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain. (1047 aa)
SGRA_0518Hypothetical protein. (105 aa)
SGRA_0197RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
SGRA_0144Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (310 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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