STRINGSTRING
recJ recJ SGRA_3885 SGRA_3885 xseA xseA polA polA SGRA_3455 SGRA_3455 dnaE dnaE SGRA_3136 SGRA_3136 SGRA_2753 SGRA_2753 xthA xthA holB holB uvrD uvrD dnaN dnaN dnaQ-2 dnaQ-2 recQ recQ SGRA_0949 SGRA_0949 rnr rnr SGRA_0456 SGRA_0456 SGRA_0330 SGRA_0330 SGRA_0217 SGRA_0217 dnaQ dnaQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
recJCOG0608 Single-stranded DNA-specific exonuclease. (564 aa)
SGRA_3885Hypothetical protein; COG1561 Uncharacterized stress-induced protein. (287 aa)
xseACOG1570 Exonuclease VII, large subunit; Belongs to the XseA family. (399 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (927 aa)
SGRA_3455COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (206 aa)
dnaECOG0587 DNA polymerase III, alpha subunit. (1176 aa)
SGRA_31363'-5' exonuclease; COG0349 Ribonuclease D. (194 aa)
SGRA_2753Hypothetical protein. (954 aa)
xthAExodeoxyribonuclease III Xth; COG0708 Exonuclease III. (257 aa)
holBCOG2812 DNA polymerase III, gamma/tau subunits. (385 aa)
uvrDCOG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily. (1069 aa)
dnaNDNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa)
dnaQ-2COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (248 aa)
recQATP-dependent DNA helicase, RecQ family protein; COG0514 Superfamily II DNA helicase. (2930 aa)
SGRA_0949COG1722 Exonuclease VII small subunit. (65 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (986 aa)
SGRA_0456Hypothetical protein. (591 aa)
SGRA_03303-5 exonuclease eri-1; COG5018 Inhibitor of the KinA pathway to sporulation, predicted exonuclease. (183 aa)
SGRA_0217CRISPR-associated protein, Csm1 family; COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs). (903 aa)
dnaQCOG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (267 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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