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| | rpoE-4 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa) |
| | nusA | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. (438 aa) |
| | SGRA_1132 | Two component, sigma54 specific, Fis family transcriptional regulator; COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain. (534 aa) |
| | SGRA_1158 | Two component LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (231 aa) |
| | SGRA_1244 | Hypothetical protein. (237 aa) |
| | SGRA_1246 | AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (280 aa) |
| | SGRA_1250 | Type 4 fimbriae expression regulatory protein PilR; COG3283 Transcriptional regulator of aromatic amino acids metabolism. (300 aa) |
| | SGRA_1255 | Type 4 fimbriae expression regulatory protein PilR; COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain. (608 aa) |
| | pleC1 | Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase. (678 aa) |
| | SGRA_0043 | Type 4 fimbriae expression regulatory protein pilR; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (549 aa) |
| | SGRA_0128 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (291 aa) |
| | SGRA_0144 | Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (310 aa) |
| | SGRA_0197 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa) |
| | phoB1 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (237 aa) |
| | SGRA_0310 | COG1733 Predicted transcriptional regulators. (113 aa) |
| | SGRA_0410 | Transcriptional regulator, Crp/Fnr family protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (149 aa) |
| | SGRA_0451 | Hypothetical protein. (836 aa) |
| | SGRA_0518 | Hypothetical protein. (105 aa) |
| | SGRA_0546 | Putative transcriptional regulator, Crp/Fnr family; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (190 aa) |
| | SGRA_0571 | Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (287 aa) |
| | SGRA_0576 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (132 aa) |
| | degS | Multi-sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain. (1047 aa) |
| | narL | Two component transcriptional regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (219 aa) |
| | rpoE | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa) |
| | SGRA_0626 | COG5343 Uncharacterized protein conserved in bacteria. (281 aa) |
| | fur | Ferric-uptake regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (154 aa) |
| | SGRA_0696 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (116 aa) |
| | SGRA_0705 | Organic hydroperoxide resistance transcriptionalregulator; COG1846 Transcriptional regulators. (146 aa) |
| | rpoE-2 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa) |
| | SGRA_0735 | Penicillinase repressor; COG3682 Predicted transcriptional regulator. (108 aa) |
| | SGRA_0764 | Putative two component, sigma54 specific, transcriptional regulator, Fis family protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (421 aa) |
| | rpoD | RNA polymerase, sigma 70 subunit, RpoD subfamily protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa) |
| | SGRA_0789 | Hypothetical protein. (124 aa) |
| | mraZ | MraZ protein; COG2001 Uncharacterized protein conserved in bacteria; Belongs to the MraZ family. (153 aa) |
| | SGRA_1024 | Zinc finger SWIM domain protein. (534 aa) |
| | rpoE-3 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa) |
| | hupB | DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (108 aa) |
| | SGRA_1293 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (290 aa) |
| | birA | COG0340 Biotin-(acetyl-CoA carboxylase) ligase. (272 aa) |
| | SGRA_1375 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa) |
| | SGRA_1410 | Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (111 aa) |
| | SGRA_1412 | Transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (78 aa) |
| | SGRA_1467 | Regulatory protein ArsR; COG0640 Predicted transcriptional regulators. (112 aa) |
| | SGRA_1541 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (241 aa) |
| | SGRA_1554 | Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (281 aa) |
| | rpoE-5 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa) |
| | rpoE-6 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (175 aa) |
| | rpoS | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (290 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1122 aa) |
| | fnr | CRP family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (223 aa) |
| | SGRA_1732 | RNA polymerase, sigma-E factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa) |
| | rpoE-7 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | SGRA_1788 | Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators. (294 aa) |
| | SGRA_1866 | Hypothetical protein. (189 aa) |
| | SGRA_1892 | COG2207 AraC-type DNA-binding domain-containing proteins. (296 aa) |
| | SGRA_1935 | LexA DNA-binding protein; COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen. (446 aa) |
| | SGRA_1937 | COG0506 Proline dehydrogenase. (362 aa) |
| | greA | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (160 aa) |
| | SGRA_2093 | Two component transcriptional regulator, LuxR family protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (289 aa) |
| | SGRA_2114 | Transcriptional regulator, BadM/Rrf2 family protein; COG1959 Predicted transcriptional regulator. (145 aa) |
| | SGRA_2152 | COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase). (135 aa) |
| | SGRA_2160 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (289 aa) |
| | SGRA_2161 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (284 aa) |
| | SGRA_2162 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (296 aa) |
| | SGRA_2167 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (286 aa) |
| | SGRA_2168 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (290 aa) |
| | SGRA_2169 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (283 aa) |
| | SGRA_2285 | RNA polymerase sigma factor, sigma-70 family protein; COG1191 DNA-directed RNA polymerase specialized sigma subunit. (199 aa) |
| | nusG | NusG antitermination factor; Participates in transcription elongation, termination and antitermination. (180 aa) |
| | pal-3 | OmpA/MotB domain-containing protein; COG0457 FOG: TPR repeat. (675 aa) |
| | SGRA_2395 | ECF subfamily RNA polymerase sigma-24 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa) |
| | SGRA_2396 | anti-FecI sigma factor, FecR; COG3712 Fe2+-dicitrate sensor, membrane component. (339 aa) |
| | rpoE-8 | RNA polymerase, sigma-24 subunit, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa) |
| | SGRA_2415 | Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (151 aa) |
| | SGRA_2416 | Transcriptional regulator, XRE family; COG1813 Predicted transcription factor, homolog of eukaryotic MBF1. (105 aa) |
| | rpoE-9 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | SGRA_2500 | Sigma54 specific transcriptional regulator, Fis family protein; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (433 aa) |
| | SGRA_2521 | Hypothetical protein; COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit. (105 aa) |
| | hupB-2 | COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family. (106 aa) |
| | SGRA_2648 | COG0640 Predicted transcriptional regulators. (99 aa) |
| | oxyR | Redox-sensitive transcriptional activator OxyR; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (308 aa) |
| | SGRA_2699 | COG1846 Transcriptional regulators. (216 aa) |
| | troR | Iron dependent repressor; COG1321 Mn-dependent transcriptional regulator. (223 aa) |
| | lrp | Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (165 aa) |
| | SGRA_2979 | Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (288 aa) |
| | fur-2 | Fur family transcriptional regulator protein; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family. (139 aa) |
| | SGRA_3138 | Hypothetical protein. (509 aa) |
| | SGRA_3207 | Transcriptional regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (239 aa) |
| | SGRA_3208 | Two component transcriptional regulator, LuxR family; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (175 aa) |
| | SGRA_3209 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (99 aa) |
| | SGRA_3210 | Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (291 aa) |
| | SGRA_3211 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (119 aa) |
| | SGRA_3212 | Switch protein/serine-threonine kinase; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase). (132 aa) |
| | SGRA_3213 | Putative anti-sigma regulatory factor, serine/threonine protein kinase; COG0656 Aldo/keto reductases, related to diketogulonate reductase. (200 aa) |
| | cheY | Chemotaxis response regulator (CheY); COG0784 FOG: CheY-like receiver. (127 aa) |
| | rpoN | COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog. (539 aa) |
| | rpoE-10 | RNA polymerase, sigma-24 subunit, ecf subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa) |
| | SGRA_3372 | Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (303 aa) |
| | pilH | Two-component system response regulator; COG0784 FOG: CheY-like receiver. (122 aa) |
| | phoB1-2 | Two component transcriptional regulator, winged helix family protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (235 aa) |
| | SGRA_3560 | COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (291 aa) |
| | SGRA_3596 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (211 aa) |
| | nusB | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (311 aa) |
| | SGRA_3650 | rsbR, positive regulator of sigma-B; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (286 aa) |
| | SGRA_3651 | COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (289 aa) |
| | SGRA_3662 | Hypothetical protein. (278 aa) |
| | SGRA_3663 | Hypothetical protein. (270 aa) |
| | SGRA_3683 | Hypothetical protein; COG0457 FOG: TPR repeat. (317 aa) |
| | oxyR-2 | Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (314 aa) |
| | SGRA_3852 | Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (288 aa) |
| | oxyR-3 | Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (315 aa) |
| | SGRA_3882 | COG1510 Predicted transcriptional regulators; Belongs to the GbsR family. (218 aa) |
| | SGRA_4027 | Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (292 aa) |
| | SGRA_4073 | Hypothetical protein; COG2378 Predicted transcriptional regulator. (338 aa) |
| | SGRA_4095 | Hypothetical protein. (358 aa) |
| | SGRA_4102 | rsbR, positive regulator of sigma-B; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (333 aa) |
| | rpoE-11 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa) |
| | asnC | Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (160 aa) |
