STRINGSTRING
glpK glpK SGRA_0111 SGRA_0111 SGRA_0117 SGRA_0117 SGRA_0138 SGRA_0138 SGRA_0178 SGRA_0178 phoR phoR SGRA_0285 SGRA_0285 SGRA_0300 SGRA_0300 SGRA_0326 SGRA_0326 dacA dacA SGRA_0468 SGRA_0468 SGRA_0494 SGRA_0494 SGRA_0498 SGRA_0498 lpxK lpxK SGRA_0564 SGRA_0564 SGRA_0590 SGRA_0590 degS degS dpx dpx adk adk SGRA_0662 SGRA_0662 SGRA_0688 SGRA_0688 SGRA_0742 SGRA_0742 coaX coaX mraY mraY SGRA_0933 SGRA_0933 ppnK ppnK SGRA_1023 SGRA_1023 SGRA_1082 SGRA_1082 udk udk SGRA_1151 SGRA_1151 mvaD mvaD SGRA_1248 SGRA_1248 pleC1 pleC1 dnaX dnaX SGRA_1279 SGRA_1279 SGRA_1298 SGRA_1298 SGRA_1340 SGRA_1340 SGRA_1358 SGRA_1358 thiD thiD phoR-2 phoR-2 prsA prsA SGRA_1592 SGRA_1592 pyrH pyrH SGRA_1642 SGRA_1642 SGRA_1653 SGRA_1653 dnaG dnaG SGRA_1804 SGRA_1804 rpoA rpoA SGRA_1856 SGRA_1856 SGRA_1857 SGRA_1857 manC manC dnaN dnaN SGRA_1919 SGRA_1919 pfk pfk coaE coaE cdsA cdsA thrB thrB SGRA_2073 SGRA_2073 holB holB SGRA_2092 SGRA_2092 SGRA_2115 SGRA_2115 SGRA_2152 SGRA_2152 SGRA_2193 SGRA_2193 SGRA_2267 SGRA_2267 rpoB rpoB rpoC rpoC pssA pssA SGRA_2356 SGRA_2356 thiL thiL SGRA_2434 SGRA_2434 rfbA rfbA SGRA_2503 SGRA_2503 pyk pyk pnp pnp SGRA_2546 SGRA_2546 comL comL SGRA_2567 SGRA_2567 folK folK SGRA_2628 SGRA_2628 SGRA_2636 SGRA_2636 sprA sprA SGRA_2730 SGRA_2730 mvaK1 mvaK1 SGRA_2864 SGRA_2864 SGRA_3022 SGRA_3022 SGRA_3081 SGRA_3081 rfbA-2 rfbA-2 SGRA_3156 SGRA_3156 SGRA_3212 SGRA_3212 SGRA_3213 SGRA_3213 cheA cheA SGRA_3231 SGRA_3231 kptA kptA rpoN rpoN SGRA_3250 SGRA_3250 holA holA cca cca anmK anmK SGRA_3379 SGRA_3379 ppk ppk lysC lysC dnaE dnaE aroK aroK SGRA_3446 SGRA_3446 polA polA SGRA_3549 SGRA_3549 ndk ndk SGRA_3733 SGRA_3733 kdsB kdsB tdk tdk SGRA_3791 SGRA_3791 cmk cmk SGRA_3836 SGRA_3836 SGRA_3842 SGRA_3842 nadD nadD SGRA_3885 SGRA_3885 gmk gmk SGRA_3933 SGRA_3933 pgk pgk SGRA_4004 SGRA_4004 coaD coaD SGRA_4184 SGRA_4184 SGRA_4188 SGRA_4188
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
glpKGlycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (494 aa)
SGRA_0111Gaf sensor signal transduction histidine kinase; COG2203 FOG: GAF domain. (412 aa)
SGRA_0117Mannose-1-phosphate guanyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon). (242 aa)
SGRA_0138COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (850 aa)
SGRA_0178Signal transduction histidine kinase, LytS; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (352 aa)
phoRHistidine kinase; COG0642 Signal transduction histidine kinase. (355 aa)
SGRA_0285COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (811 aa)
SGRA_0300COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (691 aa)
SGRA_0326Histidine kinase; COG0642 Signal transduction histidine kinase. (1237 aa)
dacAHypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (256 aa)
SGRA_0468COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (888 aa)
SGRA_0494Signal transduction histidine kinase, LytS; COG3275 Putative regulator of cell autolysis. (354 aa)
SGRA_0498COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (733 aa)
lpxKTetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (361 aa)
SGRA_0564Riboflavin biosynthesis protein RibF; COG0196 FAD synthase; Belongs to the ribF family. (315 aa)
SGRA_0590Gaf sensor signal transduction histidine kinase; COG2203 FOG: GAF domain. (400 aa)
degSMulti-sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain. (1047 aa)
dpxPHP domain protein; COG1796 DNA polymerase IV (family X). (556 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (192 aa)
SGRA_0662COG2849 Uncharacterized protein conserved in bacteria. (176 aa)
SGRA_0688COG2849 Uncharacterized protein conserved in bacteria. (218 aa)
SGRA_0742Glutamate-rich protein grpB. (177 aa)
coaXPantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. (247 aa)
mraYphospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (417 aa)
SGRA_0933Phosphopantetheinyl transferase-like protein; COG2091 Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. (210 aa)
ppnKInorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. (295 aa)
SGRA_1023RNA-directed DNA polymerase; COG3344 Retron-type reverse transcriptase. (554 aa)
SGRA_1082Serine/threonine protein kinase; COG2815 Uncharacterized protein conserved in bacteria. (302 aa)
udkCOG0572 Uridine kinase. (209 aa)
SGRA_1151Nucleotidyl transferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon). (399 aa)
mvaDCOG3407 Mevalonate pyrophosphate decarboxylase. (347 aa)
SGRA_1248O-methyltransferase family 2. (231 aa)
pleC1Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase. (678 aa)
dnaXDNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (593 aa)
SGRA_1279Hypothetical protein. (104 aa)
SGRA_1298COG2849 Uncharacterized protein conserved in bacteria. (237 aa)
SGRA_1340PfkB domain protein; COG0524 Sugar kinases, ribokinase family. (304 aa)
SGRA_1358Hypothetical protein. (310 aa)
thiDCOG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. (253 aa)
phoR-2Histidine kinase; COG0642 Signal transduction histidine kinase. (500 aa)
prsARibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (320 aa)
SGRA_1592COG0515 Serine/threonine protein kinase. (349 aa)
pyrHUridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. (239 aa)
SGRA_1642COG2849 Uncharacterized protein conserved in bacteria. (201 aa)
SGRA_1653Membrane associated hydrolase. (851 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (683 aa)
SGRA_1804COG0818 Diacylglycerol kinase. (125 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (332 aa)
SGRA_1856Histidine kinase; COG0642 Signal transduction histidine kinase. (771 aa)
SGRA_1857Two component transcriptional regulator, LuxR family protein; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain. (280 aa)
manCCOG0836 Mannose-1-phosphate guanylyltransferase. (364 aa)
dnaNDNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa)
SGRA_1919Death-on-curing family protein; COG3654 Prophage maintenance system killer protein. (152 aa)
pfk6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (325 aa)
coaEdephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (203 aa)
cdsAPhosphatidate cytidylyltransferase; COG0575 CDP-diglyceride synthetase; Belongs to the CDS family. (286 aa)
thrBCOG0083 Homoserine kinase. (303 aa)
SGRA_2073COG2849 Uncharacterized protein conserved in bacteria. (282 aa)
holBCOG2812 DNA polymerase III, gamma/tau subunits. (385 aa)
SGRA_2092Histidine kinase; COG0642 Signal transduction histidine kinase. (728 aa)
SGRA_2115Two-component system response regulator; COG0784 FOG: CheY-like receiver. (520 aa)
SGRA_2152COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase). (135 aa)
SGRA_2193Hypothetical protein; COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins. (594 aa)
SGRA_2267COG2035 Predicted membrane protein. (302 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1276 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1420 aa)
pssACDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (248 aa)
SGRA_2356Two component regulator propeller domain protein; COG3292 Predicted periplasmic ligand-binding sensor domain. (770 aa)
thiLThiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. (342 aa)
SGRA_2434Glycosyl transferase family 4; COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase. (378 aa)
rfbAGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (289 aa)
SGRA_2503Hypothetical protein. (326 aa)
pykCOG0469 Pyruvate kinase; Belongs to the pyruvate kinase family. (477 aa)
pnpPolynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (747 aa)
SGRA_2546DNA-directed RNA polymerase, omega subunit. (113 aa)
comLOuter membrane assembly lipoprotein YfiO; COG4105 DNA uptake lipoprotein. (270 aa)
SGRA_2567TPR repeat-containing protein; COG0457 FOG: TPR repeat. (297 aa)
folK2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase. (162 aa)
SGRA_2628COG1428 Deoxynucleoside kinases. (219 aa)
SGRA_2636Hypothetical protein. (288 aa)
sprAGliding motility protein SprA. (2512 aa)
SGRA_2730Lipopolysaccharide biosynthesis protein. (372 aa)
mvaK1COG1577 Mevalonate kinase. (296 aa)
SGRA_2864Morn variant repeat-containing protein; COG2849 Uncharacterized protein conserved in bacteria. (238 aa)
SGRA_3022Morn variant repeat-containing protein; COG2849 Uncharacterized protein conserved in bacteria. (324 aa)
SGRA_3081Putative thioredoxin; COG2849 Uncharacterized protein conserved in bacteria. (644 aa)
rfbA-2Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (331 aa)
SGRA_3156Hypothetical protein. (473 aa)
SGRA_3212Switch protein/serine-threonine kinase; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase). (132 aa)
SGRA_3213Putative anti-sigma regulatory factor, serine/threonine protein kinase; COG0656 Aldo/keto reductases, related to diketogulonate reductase. (200 aa)
cheACOG0643 Chemotaxis protein histidine kinase and related kinases. (551 aa)
SGRA_3231COG2849 Uncharacterized protein conserved in bacteria. (484 aa)
kptAPhosphate acetyltransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (186 aa)
rpoNCOG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog. (539 aa)
SGRA_3250Histidine kinase; COG0642 Signal transduction histidine kinase. (394 aa)
holACOG1466 DNA polymerase III, delta subunit. (356 aa)
ccaCOG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (476 aa)
anmKanhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (370 aa)
SGRA_3379COG0286 Type I restriction-modification system methyltransferase subunit. (911 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (695 aa)
lysCCOG0527 Aspartokinases; Belongs to the aspartokinase family. (424 aa)
dnaECOG0587 DNA polymerase III, alpha subunit. (1176 aa)
aroKShikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (174 aa)
SGRA_3446Histidine kinase; COG0591 Na+/proline symporter. (895 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (927 aa)
SGRA_3549Histidine kinase; COG0642 Signal transduction histidine kinase. (326 aa)
ndkNucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (139 aa)
SGRA_3733COG1428 Deoxynucleoside kinases. (210 aa)
kdsB3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (238 aa)
tdkCOG1435 Thymidine kinase. (184 aa)
SGRA_3791Hypothetical protein. (493 aa)
cmkCOG0283 Cytidylate kinase. (237 aa)
SGRA_3836Serine/threonine protein kinase. (340 aa)
SGRA_3842Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (328 aa)
nadDNicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (191 aa)
SGRA_3885Hypothetical protein; COG1561 Uncharacterized stress-induced protein. (287 aa)
gmkGuanylate kinase; Essential for recycling GMP and indirectly, cGMP. (206 aa)
SGRA_39334'-phosphopantetheinyl transferase superfamily protein; COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); Belongs to the P-Pant transferase superfamily. (190 aa)
pgkCOG0126 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (403 aa)
SGRA_4004Ribonuclease HII. (897 aa)
coaDPhosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa)
SGRA_4184Two component regulator propeller domain protein; COG3292 Predicted periplasmic ligand-binding sensor domain. (357 aa)
SGRA_4188Hypothetical protein; COG2971 Predicted N-acetylglucosamine kinase. (281 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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