STRINGSTRING
rsmD rsmD SGRA_0250 SGRA_0250 rlmN rlmN prmA prmA SGRA_0541 SGRA_0541 rsmB rsmB SGRA_0702 SGRA_0702 mraW mraW rsmI rsmI SGRA_1262 SGRA_1262 SGRA_1339 SGRA_1339 hemK hemK ypsC ypsC SGRA_1881 SGRA_1881 ksgA ksgA gidB gidB yjfH yjfH SGRA_2290 SGRA_2290 dcm dcm SGRA_2453 SGRA_2453 pcm pcm spoU spoU trmB trmB SGRA_2969 SGRA_2969 cheR cheR SGRA_3227 SGRA_3227 ybeA ybeA SGRA_3354 SGRA_3354 hsdM hsdM SGRA_3429 SGRA_3429 SGRA_3813 SGRA_3813 hsdM-2 hsdM-2 trmD trmD SGRA_4031 SGRA_4031 hsdM-3 hsdM-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rsmDMethyltransferase; COG0742 N6-adenine-specific methylase. (184 aa)
SGRA_0250Fmu (sun) domain protein; COG0144 tRNA and rRNA cytosine-C5-methylases. (450 aa)
rlmNRibosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (348 aa)
prmACOG2264 Ribosomal protein L11 methylase. (276 aa)
SGRA_0541COG3597 Uncharacterized protein/domain associated with GTPases. (242 aa)
rsmBRibosomal RNA small subunit methyltransferase B; COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (405 aa)
SGRA_070223S rRNA (uracil-5-)-methyltransferase RumA; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (501 aa)
mraWS-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (302 aa)
rsmIUroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (252 aa)
SGRA_1262Hypothetical protein; COG0500 SAM-dependent methyltransferases. (391 aa)
SGRA_1339COG0566 rRNA methylases. (145 aa)
hemKN5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; COG2890 Methylase of polypeptide chain release factors. (270 aa)
ypsCTHUMP domain-containing protein; COG0116 Predicted N6-adenine-specific DNA methylase; Belongs to the methyltransferase superfamily. (399 aa)
SGRA_1881RNA methyltransferase YjfH; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (250 aa)
ksgA16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (264 aa)
gidBMethyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (210 aa)
yjfHRNA methyltransferase, TrmH family, group 3; COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (239 aa)
SGRA_2290N-6 DNA methylase; COG0286 Type I restriction-modification system methyltransferase subunit. (629 aa)
dcmDNA-cytosine methyltransferase; COG0270 Site-specific DNA methylase. (418 aa)
SGRA_2453COG2940 Proteins containing SET domain. (128 aa)
pcmprotein-l-isoaspartate(D-aspartate) o-methyltransferase; COG2518 Protein-L-isoaspartate carboxylmethyltransferase. (219 aa)
spoUtRNA/rRNA methyltransferase (SpoU); COG0566 rRNA methylases. (252 aa)
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (226 aa)
SGRA_2969Putative SpoU rRNA methylase family protein; COG0566 rRNA methylases. (179 aa)
cheRMCP methyltransferase, CheR-type; COG1352 Methylase of chemotaxis methyl-accepting proteins. (280 aa)
SGRA_3227MCP methyltransferase, CheR-type; COG1352 Methylase of chemotaxis methyl-accepting proteins. (260 aa)
ybeArRNA large subunit methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa)
SGRA_33545-methylaminomethyl-2-thiouridine methyltransferase. (229 aa)
hsdMCOG0286 Type I restriction-modification system methyltransferase subunit. (501 aa)
SGRA_3429Putative DNA-binding protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (237 aa)
SGRA_3813Hypothetical protein; COG1100 GTPase SAR1 and related small G proteins. (151 aa)
hsdM-2COG0286 Type I restriction-modification system methyltransferase subunit. (512 aa)
trmDtRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (226 aa)
SGRA_4031rRNA (guanine-N(2)-)-methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (363 aa)
hsdM-3COG0286 Type I restriction-modification system methyltransferase subunit. (780 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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