STRINGSTRING
SGRA_0323 SGRA_0323 glpK glpK kdsC kdsC SGRA_0319 SGRA_0319 SGRA_0396 SGRA_0396 SGRA_0563 SGRA_0563 SGRA_1264 SGRA_1264 SGRA_1477 SGRA_1477 suhB suhB cysQ cysQ pfk pfk SGRA_2095 SGRA_2095 SGRA_2127 SGRA_2127 SGRA_2267 SGRA_2267 glgA glgA kdsA kdsA rfbA rfbA SGRA_2730 SGRA_2730 icd-2 icd-2 SGRA_2903 SGRA_2903 rfbA-2 rfbA-2 SGRA_3146 SGRA_3146 SGRA_3482 SGRA_3482 SGRA_3593 SGRA_3593 kdsB kdsB SGRA_3842 SGRA_3842 kdtA kdtA SGRA_4058 SGRA_4058 SGRA_4150 SGRA_4150
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SGRA_0323Hypothetical protein. (479 aa)
glpKGlycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (494 aa)
kdsC3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; COG1778 Low specificity phosphatase (HAD superfamily). (174 aa)
SGRA_0319Membrane bound O-acyl transferase MBOAT family protein; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family. (477 aa)
SGRA_0396Membrane bound o-acyl transferase mboat family protein; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family. (487 aa)
SGRA_0563COG1216 Predicted glycosyltransferases. (379 aa)
SGRA_1264Hypothetical protein. (491 aa)
SGRA_1477Dolichyl-phosphate-mannose-protein mannosyltransferase family protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family. (544 aa)
suhBInositol monophosphatase; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family. (268 aa)
cysQ3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (263 aa)
pfk6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (325 aa)
SGRA_2095Hypothetical protein. (550 aa)
SGRA_2127Heptosyltransferase family protein; COG0859 ADP-heptose:LPS heptosyltransferase. (332 aa)
SGRA_2267COG2035 Predicted membrane protein. (302 aa)
glgACOG0297 Glycogen synthase. (271 aa)
kdsA2-dehydro-3-deoxyphosphooctonate aldolase; COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; Belongs to the KdsA family. (267 aa)
rfbAGlucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (289 aa)
SGRA_2730Lipopolysaccharide biosynthesis protein. (372 aa)
icd-2COG0538 Isocitrate dehydrogenases. (399 aa)
SGRA_2903Glycosyl transferase family protein. (556 aa)
rfbA-2Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (331 aa)
SGRA_3146B-glycosyltransferase; COG1216 Predicted glycosyltransferases. (670 aa)
SGRA_3482RfaQ-like lipopolysaccharide core biosynthesis glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase. (346 aa)
SGRA_3593Alginate O-acetylation protein; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family. (498 aa)
kdsB3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (238 aa)
SGRA_3842Nucleotidyl transferase; COG1209 dTDP-glucose pyrophosphorylase. (328 aa)
kdtA3-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (414 aa)
SGRA_40584-alpha-L-fucosyltransferase. (389 aa)
SGRA_4150Phosphoesterase PA-phosphatase related protein; COG0671 Membrane-associated phospholipid phosphatase. (190 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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