27 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dnaN	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (372 aa)
	dnaX	DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (593 aa)
	SGRA_1023	RNA-directed DNA polymerase; COG3344 Retron-type reverse transcriptase. (554 aa)
	nrdA	Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (803 aa)
	SGRA_0925	Polysaccharide biosynthesis protein; COG0417 DNA polymerase elongation subunit (family B). (140 aa)
	dpx	PHP domain protein; COG1796 DNA polymerase IV (family X). (556 aa)
	SGRA_0403	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (440 aa)
	SGRA_0401	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence. (532 aa)
	SGRA_0400	AAA ATPase. (287 aa)
	holB	COG2812 DNA polymerase III, gamma/tau subunits. (385 aa)
	SGRA_2572	SMC domain protein; COG4637 Predicted ATPase. (454 aa)
	sprA	Gliding motility protein SprA. (2512 aa)
	SGRA_2901	Hypothetical protein; COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA. (678 aa)
	SGRA_2984	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (399 aa)
	SGRA_3037	SMC domain protein; COG1122 ABC-type cobalt transport system, ATPase component. (620 aa)
	SGRA_3038	Hypothetical protein; COG1403 Restriction endonuclease. (319 aa)
	SGRA_3257	Hypothetical protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components. (371 aa)
	holA	COG1466 DNA polymerase III, delta subunit. (356 aa)
	SGRA_3404	ATPase-like protein; COG4637 Predicted ATPase. (354 aa)
	dnaE	COG0587 DNA polymerase III, alpha subunit. (1176 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (927 aa)
	SGRA_3606	Hypothetical protein. (429 aa)
	tdk	COG1435 Thymidine kinase. (184 aa)
	SGRA_3869	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (433 aa)
	apaG	Co2+/Mg2+ efflux protein ApaG; COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport. (129 aa)
	SGRA_3894	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence. (441 aa)
	SGRA_4131	ATPase; COG3950 Predicted ATP-binding protein involved in virulence. (751 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGRA_0400	SGRA_0401	SGRA_0400	SGRA_0401	AAA ATPase.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.779
SGRA_0400	SGRA_0403	SGRA_0400	SGRA_0403	AAA ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.421
SGRA_0401	SGRA_0400	SGRA_0401	SGRA_0400	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.779
SGRA_0401	SGRA_0403	SGRA_0401	SGRA_0403	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0401	SGRA_2572	SGRA_0401	SGRA_2572	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG4637 Predicted ATPase.	0.692
SGRA_0401	SGRA_3404	SGRA_0401	SGRA_3404	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	ATPase-like protein; COG4637 Predicted ATPase.	0.530
SGRA_0403	SGRA_0400	SGRA_0403	SGRA_0400	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase.	0.421
SGRA_0403	SGRA_0401	SGRA_0403	SGRA_0401	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.674
SGRA_0403	SGRA_2572	SGRA_0403	SGRA_2572	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG4637 Predicted ATPase.	0.412
SGRA_0403	SGRA_2984	SGRA_0403	SGRA_2984	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.515
SGRA_0403	SGRA_3037	SGRA_0403	SGRA_3037	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain protein; COG1122 ABC-type cobalt transport system, ATPase component.	0.525
SGRA_0403	SGRA_3869	SGRA_0403	SGRA_3869	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.514
SGRA_0403	SGRA_3894	SGRA_0403	SGRA_3894	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	SMC domain-containing protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.475
SGRA_0403	SGRA_4131	SGRA_0403	SGRA_4131	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.420
SGRA_0925	dnaN	SGRA_0925	SGRA_1874	Polysaccharide biosynthesis protein; COG0417 DNA polymerase elongation subunit (family B).	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.973
SGRA_0925	dpx	SGRA_0925	SGRA_0617	Polysaccharide biosynthesis protein; COG0417 DNA polymerase elongation subunit (family B).	PHP domain protein; COG1796 DNA polymerase IV (family X).	0.422
SGRA_0925	polA	SGRA_0925	SGRA_3534	Polysaccharide biosynthesis protein; COG0417 DNA polymerase elongation subunit (family B).	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.964
SGRA_0925	sprA	SGRA_0925	SGRA_2672	Polysaccharide biosynthesis protein; COG0417 DNA polymerase elongation subunit (family B).	Gliding motility protein SprA.	0.955
SGRA_2572	SGRA_0401	SGRA_2572	SGRA_0401	SMC domain protein; COG4637 Predicted ATPase.	SMC domain protein; COG3950 Predicted ATP-binding protein involved in virulence.	0.692
SGRA_2572	SGRA_0403	SGRA_2572	SGRA_0403	SMC domain protein; COG4637 Predicted ATPase.	AAA ATPase; COG3950 Predicted ATP-binding protein involved in virulence.	0.412