47 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGRA_3852	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (288 aa)
	SGRA_4026	Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (262 aa)
	SGRA_4102	rsbR, positive regulator of sigma-B; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (333 aa)
	SGRA_0128	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (291 aa)
	SGRA_0240	Patatin. (825 aa)
	SGRA_0460	Vitamin K-dependent gamma-carboxylase. (434 aa)
	SGRA_0571	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (287 aa)
	SGRA_0576	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (132 aa)
	SGRA_0696	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (116 aa)
	SGRA_0771	Hypothetical protein. (617 aa)
	SGRA_1103	Vitamin k-dependent gamma-carboxylase. (440 aa)
	SGRA_1217	Hypothetical protein. (288 aa)
	SGRA_1293	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (290 aa)
	SGRA_1463	COG0526 Thiol-disulfide isomerase and thioredoxins. (78 aa)
	gldK	Gliding motility protein GldK. (421 aa)
	fadD	COG1022 Long-chain acyl-CoA synthetases (AMP-forming). (607 aa)
	phnP	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I. (254 aa)
	rfbB-2	dTDP-glucose 4,6-dehydratase, NAD-dependent epimerase/dehydratase-related protein; COG0451 Nucleoside-diphosphate-sugar epimerases. (310 aa)
	motB	OmpA/MotB domain protein; COG1360 Flagellar motor protein. (347 aa)
	galE	NAD dependent epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases. (330 aa)
	SGRA_1965	Beta-lactamase domain protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family. (232 aa)
	SGRA_1997	COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (636 aa)
	arsA	Arsenite-activated ATPase (arsA) subfamily protein; COG0003 Oxyanion-translocating ATPase. (384 aa)
	tktA	COG3959 Transketolase, N-terminal subunit. (281 aa)
	SGRA_2160	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (289 aa)
	SGRA_2161	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (284 aa)
	SGRA_2162	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (296 aa)
	SGRA_2167	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (286 aa)
	SGRA_2168	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (290 aa)
	SGRA_2169	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (283 aa)
	pssA	CDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (248 aa)
	SGRA_2392	COG3000 Sterol desaturase. (401 aa)
	SGRA_2608	Sigma factor regulation protein; COG2203 FOG: GAF domain. (432 aa)
	ahpC	COG0450 Peroxiredoxin. (183 aa)
	cdd	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (161 aa)
	SGRA_2877	Vitamin k-dependent gamma-carboxylase-like protein. (428 aa)
	SGRA_2983	COG1403 Restriction endonuclease. (217 aa)
	gldJ	Gliding motility protein GldJ. (511 aa)
	SGRA_3209	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family. (99 aa)
	SGRA_3210	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein. (291 aa)
	SGRA_3211	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (119 aa)
	rsbU	COG2208 Serine phosphatase RsbU, regulator of sigma subunit. (542 aa)
	SGRA_3304	Hypothetical protein; COG1077 Actin-like ATPase involved in cell morphogenesis. (1163 aa)
	SGRA_3527	Hypothetical protein. (474 aa)
	SGRA_3596	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (211 aa)
	SGRA_3650	rsbR, positive regulator of sigma-B; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (286 aa)
	SGRA_3651	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor). (289 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGRA_0128	SGRA_2608	SGRA_0128	SGRA_2608	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.497
SGRA_0128	SGRA_3211	SGRA_0128	SGRA_3211	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.710
SGRA_0128	rsbU	SGRA_0128	SGRA_3214	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG2208 Serine phosphatase RsbU, regulator of sigma subunit.	0.866
SGRA_0571	SGRA_2608	SGRA_0571	SGRA_2608	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein.	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.497
SGRA_0571	SGRA_3211	SGRA_0571	SGRA_3211	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein.	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.705
SGRA_0571	rsbU	SGRA_0571	SGRA_3214	Anti-anti-sigma regulatory factor; COG0840 Methyl-accepting chemotaxis protein.	COG2208 Serine phosphatase RsbU, regulator of sigma subunit.	0.866
SGRA_0576	SGRA_0696	SGRA_0576	SGRA_0696	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	0.660
SGRA_0576	SGRA_2608	SGRA_0576	SGRA_2608	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.858
SGRA_0576	rsbU	SGRA_0576	SGRA_3214	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG2208 Serine phosphatase RsbU, regulator of sigma subunit.	0.913
SGRA_0696	SGRA_0576	SGRA_0696	SGRA_0576	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.660
SGRA_0696	SGRA_2608	SGRA_0696	SGRA_2608	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.838
SGRA_0696	rsbU	SGRA_0696	SGRA_3214	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.	COG2208 Serine phosphatase RsbU, regulator of sigma subunit.	0.937
SGRA_1293	SGRA_2608	SGRA_1293	SGRA_2608	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.497
SGRA_1293	SGRA_3211	SGRA_1293	SGRA_3211	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.712
SGRA_1293	rsbU	SGRA_1293	SGRA_3214	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG2208 Serine phosphatase RsbU, regulator of sigma subunit.	0.866
SGRA_1463	ahpC	SGRA_1463	SGRA_2682	COG0526 Thiol-disulfide isomerase and thioredoxins.	COG0450 Peroxiredoxin.	0.510
SGRA_2160	SGRA_2161	SGRA_2160	SGRA_2161	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.789
SGRA_2160	SGRA_2162	SGRA_2160	SGRA_2162	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.649
SGRA_2160	SGRA_2608	SGRA_2160	SGRA_2608	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	Sigma factor regulation protein; COG2203 FOG: GAF domain.	0.497
SGRA_2160	SGRA_3211	SGRA_2160	SGRA_3211	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).	0.703