STRINGSTRING
rfbB-2 rfbB-2 fadD fadD SGRA_1459 SGRA_1459 SGRA_1103 SGRA_1103 SGRA_0771 SGRA_0771 SGRA_0541 SGRA_0541 SGRA_0460 SGRA_0460 plsB plsB galE galE SGRA_1937 SGRA_1937 SGRA_1965 SGRA_1965 tktA tktA SGRA_2042 SGRA_2042 SGRA_2249 SGRA_2249 SGRA_2262 SGRA_2262 pssA pssA SGRA_2327 SGRA_2327 SGRA_2394 SGRA_2394 folK folK SGRA_2628 SGRA_2628 SGRA_0240 SGRA_0240 SGRA_2877 SGRA_2877 SGRA_2983 SGRA_2983 SGRA_3129 SGRA_3129 SGRA_3391 SGRA_3391 SGRA_3436 SGRA_3436 SGRA_3483 SGRA_3483 SGRA_3733 SGRA_3733 SGRA_3958 SGRA_3958 SGRA_4026 SGRA_4026 motB motB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfbB-2dTDP-glucose 4,6-dehydratase, NAD-dependent epimerase/dehydratase-related protein; COG0451 Nucleoside-diphosphate-sugar epimerases. (310 aa)
fadDCOG1022 Long-chain acyl-CoA synthetases (AMP-forming). (607 aa)
SGRA_1459COG0785 Cytochrome c biogenesis protein. (234 aa)
SGRA_1103Vitamin k-dependent gamma-carboxylase. (440 aa)
SGRA_0771Hypothetical protein. (617 aa)
SGRA_0541COG3597 Uncharacterized protein/domain associated with GTPases. (242 aa)
SGRA_0460Vitamin K-dependent gamma-carboxylase. (434 aa)
plsBCOG2937 Glycerol-3-phosphate O-acyltransferase. (579 aa)
galENAD dependent epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases. (330 aa)
SGRA_1937COG0506 Proline dehydrogenase. (362 aa)
SGRA_1965Beta-lactamase domain protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family. (232 aa)
tktACOG3959 Transketolase, N-terminal subunit. (281 aa)
SGRA_2042Peptidase m48 ste24p; COG4783 Putative Zn-dependent protease, contains TPR repeats. (265 aa)
SGRA_2249COG1257 Hydroxymethylglutaryl-CoA reductase. (515 aa)
SGRA_2262Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (203 aa)
pssACDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (248 aa)
SGRA_2327Transporter, EamA; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (316 aa)
SGRA_2394Bacterioferritin comigratory protein; COG1225 Peroxiredoxin. (157 aa)
folK2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase. (162 aa)
SGRA_2628COG1428 Deoxynucleoside kinases. (219 aa)
SGRA_0240Patatin. (825 aa)
SGRA_2877Vitamin k-dependent gamma-carboxylase-like protein. (428 aa)
SGRA_2983COG1403 Restriction endonuclease. (217 aa)
SGRA_3129COG1231 Monoamine oxidase. (447 aa)
SGRA_3391Monooxygenase FAD-binding protein; COG0644 Dehydrogenases (flavoproteins). (388 aa)
SGRA_3436hydroxymethylglutaryl-CoA reductase, degradative; COG1257 Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. (460 aa)
SGRA_3483Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (208 aa)
SGRA_3733COG1428 Deoxynucleoside kinases. (210 aa)
SGRA_3958Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (152 aa)
SGRA_4026Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (262 aa)
motBOmpA/MotB domain protein; COG1360 Flagellar motor protein. (347 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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