18 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGRA_2327	Transporter, EamA; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (316 aa)
	pssA	CDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (248 aa)
	SGRA_2262	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (203 aa)
	SGRA_2042	Peptidase m48 ste24p; COG4783 Putative Zn-dependent protease, contains TPR repeats. (265 aa)
	SGRA_1965	Beta-lactamase domain protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family. (232 aa)
	SGRA_1937	COG0506 Proline dehydrogenase. (362 aa)
	SGRA_1459	COG0785 Cytochrome c biogenesis protein. (234 aa)
	katE	COG0753 Catalase; Belongs to the catalase family. (504 aa)
	SGRA_4026	Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (262 aa)
	SGRA_3958	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (152 aa)
	katE-2	COG0753 Catalase. (576 aa)
	SGRA_3733	COG1428 Deoxynucleoside kinases. (210 aa)
	SGRA_3483	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (208 aa)
	SGRA_3391	Monooxygenase FAD-binding protein; COG0644 Dehydrogenases (flavoproteins). (388 aa)
	SGRA_3129	COG1231 Monoamine oxidase. (447 aa)
	SGRA_2628	COG1428 Deoxynucleoside kinases. (219 aa)
	folK	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase. (162 aa)
	SGRA_2394	Bacterioferritin comigratory protein; COG1225 Peroxiredoxin. (157 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGRA_2327	pssA	SGRA_2327	SGRA_2326	Transporter, EamA; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	CDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.566
SGRA_2628	folK	SGRA_2628	SGRA_2627	COG1428 Deoxynucleoside kinases.	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.	0.975
SGRA_3733	folK	SGRA_3733	SGRA_2627	COG1428 Deoxynucleoside kinases.	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.	0.904
folK	SGRA_2628	SGRA_2627	SGRA_2628	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.	COG1428 Deoxynucleoside kinases.	0.975
folK	SGRA_3733	SGRA_2627	SGRA_3733	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.	COG1428 Deoxynucleoside kinases.	0.904
katE	katE-2	SGRA_0959	SGRA_3871	COG0753 Catalase; Belongs to the catalase family.	COG0753 Catalase.	0.910
katE-2	katE	SGRA_3871	SGRA_0959	COG0753 Catalase.	COG0753 Catalase; Belongs to the catalase family.	0.910
pssA	SGRA_2327	SGRA_2326	SGRA_2327	CDP-diacylglycerol-serine O-phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Transporter, EamA; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.	0.566