Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SGRA_0820 | fdx-2 | SGRA_0820 | SGRA_2393 | COG0724 RNA-binding proteins (RRM domain). | COG0633 Ferredoxin. | 0.450 |
| SGRA_1937 | acs | SGRA_1937 | SGRA_3448 | COG0506 Proline dehydrogenase. | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.445 |
| SGRA_1937 | prpE | SGRA_1937 | SGRA_0656 | COG0506 Proline dehydrogenase. | prpE protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. | 0.445 |
| SGRA_2540 | rpsB | SGRA_2540 | SGRA_1597 | Hypothetical protein. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.694 |
| SGRA_4226 | cdd | SGRA_4226 | SGRA_2805 | Metallophosphoesterase; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.903 |
| acs | SGRA_1937 | SGRA_3448 | SGRA_1937 | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | COG0506 Proline dehydrogenase. | 0.445 |
| acs | crt | SGRA_3448 | SGRA_1167 | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.571 |
| acs | pdhB | SGRA_3448 | SGRA_2542 | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.816 |
| acs | prpE | SGRA_3448 | SGRA_0656 | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | prpE protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. | 0.911 |
| cdd | SGRA_4226 | SGRA_2805 | SGRA_4226 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Metallophosphoesterase; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family. | 0.903 |
| crt | acs | SGRA_1167 | SGRA_3448 | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | Acetyl-coenzyme a synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.571 |
| crt | fixB | SGRA_1167 | SGRA_3123 | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | COG2025 Electron transfer flavoprotein, alpha subunit. | 0.614 |
| crt | prpE | SGRA_1167 | SGRA_0656 | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | prpE protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. | 0.447 |
| crt | rpsB | SGRA_1167 | SGRA_1597 | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.571 |
| fdx-2 | SGRA_0820 | SGRA_2393 | SGRA_0820 | COG0633 Ferredoxin. | COG0724 RNA-binding proteins (RRM domain). | 0.450 |
| fdx-2 | iscS | SGRA_2393 | SGRA_1882 | COG0633 Ferredoxin. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.634 |
| fdx-2 | iscS-2 | SGRA_2393 | SGRA_3206 | COG0633 Ferredoxin. | COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. | 0.634 |
| fixB | crt | SGRA_3123 | SGRA_1167 | COG2025 Electron transfer flavoprotein, alpha subunit. | COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.614 |
| fixB | pdhB | SGRA_3123 | SGRA_2542 | COG2025 Electron transfer flavoprotein, alpha subunit. | Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.486 |
| iscS | fdx-2 | SGRA_1882 | SGRA_2393 | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | COG0633 Ferredoxin. | 0.634 |
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