STRINGSTRING
ychF ychF SGRA_0030 SGRA_0030 SGRA_0279 SGRA_0279 SGRA_1997 SGRA_1997 SGRA_3848 SGRA_3848 SGRA_3811 SGRA_3811
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa)
SGRA_0030Peptidase S9B dipeptidylpeptidase IV domain protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases. (718 aa)
SGRA_0279Band 7 protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs. (314 aa)
SGRA_1997COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (636 aa)
SGRA_3848Cation diffusion facilitator family transporter; COG0053 Predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (334 aa)
SGRA_3811Peptidase S9B dipeptidylpeptidase IV domain protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases. (714 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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