STRINGSTRING
trkA trkA SGRA_0354 SGRA_0354 SGRA_0723 SGRA_0723 SGRA_1051 SGRA_1051 SGRA_1384 SGRA_1384 lptB lptB tatA tatA SGRA_2372 SGRA_2372 SGRA_2845 SGRA_2845 tatC tatC SGRA_2892 SGRA_2892 SGRA_3195 SGRA_3195 SGRA_3196 SGRA_3196 SGRA_3292 SGRA_3292 SGRA_3554 SGRA_3554 SGRA_4056 SGRA_4056 SGRA_4175 SGRA_4175
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trkAPotassium transporter peripheral membrane component; COG0569 K+ transport systems, NAD-binding component. (447 aa)
SGRA_0354Ion transporter; COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (277 aa)
SGRA_0723Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component. (243 aa)
SGRA_10514Fe-4S ferredoxin, iron-sulfur binding protein; COG1145 Ferredoxin. (118 aa)
SGRA_1384COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (646 aa)
lptBABC transporter related protein; COG1137 ABC-type (unclassified) transport system, ATPase component. (246 aa)
tatATwin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (73 aa)
SGRA_2372Permease YjgP/YjgQ family protein; COG0795 Predicted permeases. (493 aa)
SGRA_2845Sodium/proton antiporter, cpa1 family protein; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (635 aa)
tatCSec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (293 aa)
SGRA_2892Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (367 aa)
SGRA_3195Fg-gap repeat protein. (743 aa)
SGRA_3196FG-GAP repeat protein. (731 aa)
SGRA_3292Band 7 protein; COG2268 Uncharacterized protein conserved in bacteria. (710 aa)
SGRA_3554Ion transport protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (328 aa)
SGRA_4056ABC-2 type transporter; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component. (284 aa)
SGRA_4175Permease YjgP/YjgQ family protein; COG0795 Predicted permeases. (361 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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