STRINGSTRING
SGRA_3321 SGRA_3321 SGRA_3251 SGRA_3251 SGRA_2460 SGRA_2460 hutI hutI SGRA_1194 SGRA_1194 SGRA_1189 SGRA_1189 SGRA_0843 SGRA_0843 SGRA_0842 SGRA_0842 add add tatD tatD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SGRA_3321COG0402 Cytosine deaminase and related metal-dependent hydrolases. (320 aa)
SGRA_3251Hypothetical protein; COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog. (550 aa)
SGRA_2460Membrane dipeptidase. (528 aa)
hutICOG1228 Imidazolonepropionase and related amidohydrolases. (418 aa)
SGRA_1194Amidohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases. (393 aa)
SGRA_1189Amidohydrolase 3; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold. (564 aa)
SGRA_0843Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases. (1008 aa)
SGRA_0842Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases. (430 aa)
addCOG1816 Adenosine deaminase. (431 aa)
tatDHydrolase, TatD family protein; COG0084 Mg-dependent DNase. (272 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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