12 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scoA	COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (231 aa)
	scoB	COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (219 aa)
	atoB	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
	atoB-2	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	crt	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	sdhC	COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit. (207 aa)
	sdhA	COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (667 aa)
	sdhB	COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit. (257 aa)
	fadN	COG1250 3-hydroxyacyl-CoA dehydrogenase. (787 aa)
	fadJ	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (704 aa)
	paaH	COG1250 3-hydroxyacyl-CoA dehydrogenase. (296 aa)
	hmgL	hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases. (276 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
atoB	atoB-2	SGRA_0116	SGRA_0779	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.926
atoB	crt	SGRA_0116	SGRA_1167	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.820
atoB	fadJ	SGRA_0116	SGRA_2517	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.999
atoB	fadN	SGRA_0116	SGRA_2481	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.999
atoB	hmgL	SGRA_0116	SGRA_2936	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.	0.929
atoB	paaH	SGRA_0116	SGRA_2891	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.986
atoB	scoA	SGRA_0116	SGRA_0077	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.	0.922
atoB	scoB	SGRA_0116	SGRA_0078	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.	0.926
atoB-2	atoB	SGRA_0779	SGRA_0116	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.926
atoB-2	crt	SGRA_0779	SGRA_1167	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.780
atoB-2	fadJ	SGRA_0779	SGRA_2517	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.999
atoB-2	fadN	SGRA_0779	SGRA_2481	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.999
atoB-2	hmgL	SGRA_0779	SGRA_2936	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.	0.929
atoB-2	paaH	SGRA_0779	SGRA_2891	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.971
atoB-2	scoA	SGRA_0779	SGRA_0077	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.	0.922
atoB-2	scoB	SGRA_0779	SGRA_0078	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.	0.926
crt	atoB	SGRA_1167	SGRA_0116	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	acetoacetyl-CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.820
crt	atoB-2	SGRA_1167	SGRA_0779	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.780
crt	fadJ	SGRA_1167	SGRA_2517	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.933
crt	fadN	SGRA_1167	SGRA_2481	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.927