9 items (Saprospira grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGRA_0550	COG0436 Aspartate/tyrosine/aromatic aminotransferase. (373 aa)
	icd	COG0473 Isocitrate/isopropylmalate dehydrogenase. (481 aa)
	ilvE	COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (362 aa)
	gltA	COG0372 Citrate synthase; Belongs to the citrate synthase family. (440 aa)
	asd	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (330 aa)
	icd-2	COG0538 Isocitrate dehydrogenases. (399 aa)
	lysC	COG0527 Aspartokinases; Belongs to the aspartokinase family. (424 aa)
	acnA	Aconitate hydratase; COG1048 Aconitase A. (759 aa)
	aspB	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. (399 aa)

Your Current Organism:

Saprospira grandis

NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SGRA_0550	aspB	SGRA_0550	SGRA_3771	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	0.923
SGRA_0550	gltA	SGRA_0550	SGRA_2463	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0372 Citrate synthase; Belongs to the citrate synthase family.	0.858
SGRA_0550	icd	SGRA_0550	SGRA_0715	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0473 Isocitrate/isopropylmalate dehydrogenase.	0.824
SGRA_0550	icd-2	SGRA_0550	SGRA_2772	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0538 Isocitrate dehydrogenases.	0.842
SGRA_0550	lysC	SGRA_0550	SGRA_3399	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0527 Aspartokinases; Belongs to the aspartokinase family.	0.856
acnA	gltA	SGRA_3666	SGRA_2463	Aconitate hydratase; COG1048 Aconitase A.	COG0372 Citrate synthase; Belongs to the citrate synthase family.	0.996
acnA	icd	SGRA_3666	SGRA_0715	Aconitate hydratase; COG1048 Aconitase A.	COG0473 Isocitrate/isopropylmalate dehydrogenase.	0.963
acnA	icd-2	SGRA_3666	SGRA_2772	Aconitate hydratase; COG1048 Aconitase A.	COG0538 Isocitrate dehydrogenases.	0.991
asd	icd	SGRA_2574	SGRA_0715	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	COG0473 Isocitrate/isopropylmalate dehydrogenase.	0.472
asd	ilvE	SGRA_2574	SGRA_2331	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.402
asd	lysC	SGRA_2574	SGRA_3399	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	COG0527 Aspartokinases; Belongs to the aspartokinase family.	0.990
aspB	SGRA_0550	SGRA_3771	SGRA_0550	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	0.923
aspB	gltA	SGRA_3771	SGRA_2463	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0372 Citrate synthase; Belongs to the citrate synthase family.	0.858
aspB	icd	SGRA_3771	SGRA_0715	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0473 Isocitrate/isopropylmalate dehydrogenase.	0.824
aspB	icd-2	SGRA_3771	SGRA_2772	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0538 Isocitrate dehydrogenases.	0.842
aspB	lysC	SGRA_3771	SGRA_3399	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	COG0527 Aspartokinases; Belongs to the aspartokinase family.	0.856
gltA	SGRA_0550	SGRA_2463	SGRA_0550	COG0372 Citrate synthase; Belongs to the citrate synthase family.	COG0436 Aspartate/tyrosine/aromatic aminotransferase.	0.858
gltA	acnA	SGRA_2463	SGRA_3666	COG0372 Citrate synthase; Belongs to the citrate synthase family.	Aconitate hydratase; COG1048 Aconitase A.	0.996
gltA	aspB	SGRA_2463	SGRA_3771	COG0372 Citrate synthase; Belongs to the citrate synthase family.	Aminotransferase class I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase.	0.858
gltA	icd	SGRA_2463	SGRA_0715	COG0372 Citrate synthase; Belongs to the citrate synthase family.	COG0473 Isocitrate/isopropylmalate dehydrogenase.	0.640