STRINGSTRING
SGRA_0009 SGRA_0009 SGRA_0225 SGRA_0225 SGRA_0480 SGRA_0480 SGRA_0483 SGRA_0483 SGRA_0502 SGRA_0502 SGRA_0825 SGRA_0825 SGRA_1076 SGRA_1076 fadD fadD SGRA_1796 SGRA_1796 secY secY secA secA secD secD SGRA_2287 SGRA_2287 secE secE yidC yidC SGRA_2399 SGRA_2399 ftsY ftsY SGRA_2624 SGRA_2624 sprB sprB fadD-2 fadD-2 SGRA_3095 SGRA_3095 SGRA_3166 SGRA_3166 ffh ffh SGRA_3496 SGRA_3496 yajC yajC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SGRA_0009Binding-protein-dependent transport systems inner membrane component; COG4239 ABC-type uncharacterized transport system, permease component. (447 aa)
SGRA_0225Hypothetical protein. (3256 aa)
SGRA_0480Hypothetical protein; COG3291 FOG: PKD repeat. (3619 aa)
SGRA_0483Conserved repeat domain protein; COG3291 FOG: PKD repeat. (3467 aa)
SGRA_0502Serine protease, subtilase family protein; COG1404 Subtilisin-like serine proteases. (849 aa)
SGRA_0825Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (74 aa)
SGRA_1076Extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (600 aa)
fadDCOG1022 Long-chain acyl-CoA synthetases (AMP-forming). (607 aa)
SGRA_1796COG1952 Preprotein translocase subunit SecB. (145 aa)
secYPreprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (471 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (1110 aa)
secDBifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. (1058 aa)
SGRA_2287ABC transporter, ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily. (570 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (64 aa)
yidC60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. (667 aa)
SGRA_2399Putative peptidase; COG1404 Subtilisin-like serine proteases. (514 aa)
ftsYSignal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (322 aa)
SGRA_2624Gliding motility-related protein; Adhesin AidA-related protein. (1634 aa)
sprBGliding motility protein SprB. (3209 aa)
fadD-2COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (568 aa)
SGRA_3095Riboflavin biosynthesis protein ribd; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (348 aa)
SGRA_3166Fibronectin type III domain protein; COG3291 FOG: PKD repeat. (1619 aa)
ffhSignal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (447 aa)
SGRA_3496Hypothetical protein. (3505 aa)
yajCCOG1862 Preprotein translocase subunit YajC. (114 aa)
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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