10 items (Suhomyces tanzawaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1E4SBW4	45 kDa subunit of RNA polymerase II. (311 aa)
	A0A1E4SDL0	S1 motif domain-containing protein. (173 aa)
	A0A1E4SDM2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1233 aa)
	A0A1E4SEN5	DNA-directed RNA polymerases I. (73 aa)
	A0A1E4SFG6	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (214 aa)
	A0A1E4SFU9	DNA-directed RNA polymerase II subunit L. (72 aa)
	A0A1E4SI32	Putative RNA polymerase. (157 aa)
	A0A1E4SIX2	RNA polymerase II core subunit. (121 aa)
	A0A1E4SJZ1	RNA polymerase II fourth largest subunit. (191 aa)
	A0A1E4SKY6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)

Your Current Organism:

Suhomyces tanzawaensis

NCBI taxonomy Id: 984487
Other names: Candida tanzawaensis NRRL Y-17324, S. tanzawaensis NRRL Y-17324, Suhomyces tanzawaensis NRRL Y-17324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E4SBW4	A0A1E4SDL0	45 kDa subunit of RNA polymerase II.	S1 motif domain-containing protein.	0.999
A0A1E4SBW4	A0A1E4SDM2	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1E4SBW4	A0A1E4SEN5	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerases I.	0.999
A0A1E4SBW4	A0A1E4SFG6	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
A0A1E4SBW4	A0A1E4SFU9	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase II subunit L.	0.999
A0A1E4SBW4	A0A1E4SI32	45 kDa subunit of RNA polymerase II.	Putative RNA polymerase.	0.999
A0A1E4SBW4	A0A1E4SIX2	45 kDa subunit of RNA polymerase II.	RNA polymerase II core subunit.	0.999
A0A1E4SBW4	A0A1E4SJZ1	45 kDa subunit of RNA polymerase II.	RNA polymerase II fourth largest subunit.	0.999
A0A1E4SBW4	A0A1E4SKY6	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1E4SDL0	A0A1E4SBW4	S1 motif domain-containing protein.	45 kDa subunit of RNA polymerase II.	0.999
A0A1E4SDL0	A0A1E4SDM2	S1 motif domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1E4SDL0	A0A1E4SEN5	S1 motif domain-containing protein.	DNA-directed RNA polymerases I.	0.999
A0A1E4SDL0	A0A1E4SFG6	S1 motif domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
A0A1E4SDL0	A0A1E4SFU9	S1 motif domain-containing protein.	DNA-directed RNA polymerase II subunit L.	0.999
A0A1E4SDL0	A0A1E4SI32	S1 motif domain-containing protein.	Putative RNA polymerase.	0.999
A0A1E4SDL0	A0A1E4SIX2	S1 motif domain-containing protein.	RNA polymerase II core subunit.	0.999
A0A1E4SDL0	A0A1E4SJZ1	S1 motif domain-containing protein.	RNA polymerase II fourth largest subunit.	0.999
A0A1E4SDL0	A0A1E4SKY6	S1 motif domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1E4SDM2	A0A1E4SBW4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	45 kDa subunit of RNA polymerase II.	0.999
A0A1E4SDM2	A0A1E4SDL0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	S1 motif domain-containing protein.	0.999