31 items (Suhomyces tanzawaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	A0A1E4SKQ1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (514 aa)
	A0A1E4SKY6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (112 aa)
	A0A1E4SLL9	RNA polymerase II transcription factor B subunit 5. (71 aa)
	A0A1E4SM79	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (591 aa)
	A0A1E4SN21	RRM domain-containing protein. (992 aa)
	A0A1E4SN74	GCR3 protein. (935 aa)
	A0A1E4SP78	DNA repair helicase RAD3. (788 aa)
	A0A1E4SRL0	DNA helicase. (842 aa)
	A0A1E4SQE0	RNA polymerase II transcription factor B subunit 3. (340 aa)
	A0A1E4SQQ6	Tfb4-domain-containing protein. (407 aa)
	A0A1E4SFG6	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (214 aa)
	A0A1E4SFU9	DNA-directed RNA polymerase II subunit L. (72 aa)
	A0A1E4SH06	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily. (324 aa)
	A0A1E4SH19	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (112 aa)
	A0A1E4SHM1	BSD domain-containing protein. (662 aa)
	A0A1E4SET1	Uncharacterized protein. (368 aa)
	A0A1E4SEN5	DNA-directed RNA polymerases I. (73 aa)
	A0A1E4SDM2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1233 aa)
	A0A1E4SDL0	S1 motif domain-containing protein. (173 aa)
	A0A1E4SCY5	Cyclin-like protein; Belongs to the cyclin family. (387 aa)
	A0A1E4SCB2	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (957 aa)
	A0A1E4SCA0	Uncharacterized protein. (136 aa)
	A0A1E4SC93	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (497 aa)
	A0A1E4SBW4	45 kDa subunit of RNA polymerase II. (311 aa)
	A0A1E4SI32	Putative RNA polymerase. (157 aa)
	A0A1E4SIR9	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (766 aa)
	A0A1E4SIX2	RNA polymerase II core subunit. (121 aa)
	A0A1E4SJC8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1601 aa)
	A0A1E4SJJ6	Transcription initiation factor IIF, beta subunit. (372 aa)
	A0A1E4SJZ1	RNA polymerase II fourth largest subunit. (191 aa)
	A0A1E4SKM3	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)

Your Current Organism:

Suhomyces tanzawaensis

NCBI taxonomy Id: 984487
Other names: Candida tanzawaensis NRRL Y-17324, S. tanzawaensis NRRL Y-17324, Suhomyces tanzawaensis NRRL Y-17324

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E4SBW4	A0A1E4SC93	45 kDa subunit of RNA polymerase II.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.966
A0A1E4SBW4	A0A1E4SCA0	45 kDa subunit of RNA polymerase II.	Uncharacterized protein.	0.915
A0A1E4SBW4	A0A1E4SCB2	45 kDa subunit of RNA polymerase II.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.992
A0A1E4SBW4	A0A1E4SCY5	45 kDa subunit of RNA polymerase II.	Cyclin-like protein; Belongs to the cyclin family.	0.915
A0A1E4SBW4	A0A1E4SDL0	45 kDa subunit of RNA polymerase II.	S1 motif domain-containing protein.	0.999
A0A1E4SBW4	A0A1E4SDM2	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1E4SBW4	A0A1E4SEN5	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerases I.	0.999
A0A1E4SBW4	A0A1E4SET1	45 kDa subunit of RNA polymerase II.	Uncharacterized protein.	0.642
A0A1E4SBW4	A0A1E4SFG6	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
A0A1E4SBW4	A0A1E4SFU9	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase II subunit L.	0.999
A0A1E4SBW4	A0A1E4SH06	45 kDa subunit of RNA polymerase II.	Pkinase-domain-containing protein; Belongs to the protein kinase superfamily.	0.924
A0A1E4SBW4	A0A1E4SH19	45 kDa subunit of RNA polymerase II.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.993
A0A1E4SBW4	A0A1E4SHM1	45 kDa subunit of RNA polymerase II.	BSD domain-containing protein.	0.960
A0A1E4SBW4	A0A1E4SI32	45 kDa subunit of RNA polymerase II.	Putative RNA polymerase.	0.999
A0A1E4SBW4	A0A1E4SIR9	45 kDa subunit of RNA polymerase II.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.972
A0A1E4SBW4	A0A1E4SIX2	45 kDa subunit of RNA polymerase II.	RNA polymerase II core subunit.	0.999
A0A1E4SBW4	A0A1E4SJC8	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1E4SBW4	A0A1E4SJJ6	45 kDa subunit of RNA polymerase II.	Transcription initiation factor IIF, beta subunit.	0.989
A0A1E4SBW4	A0A1E4SJZ1	45 kDa subunit of RNA polymerase II.	RNA polymerase II fourth largest subunit.	0.999
A0A1E4SBW4	A0A1E4SKM3	45 kDa subunit of RNA polymerase II.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999