(5 nodes) Mixed, incl. cDENN domain, and Fungal specific transcription factor domain network (Leptosphaeria maculans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEMA_P051650.1	Similar to DENN (AEX-3) domain protein. (929 aa)
	LEMA_P107430.1	Similar to C2H2 finger domain protein. (872 aa)
	LEMA_P100310.1	Uncharacterized protein. (323 aa)
	LEMA_P017250.1	Uncharacterized protein. (357 aa)
	LEMA_P002960.1	Predicted protein. (672 aa)

Your Current Organism:

Leptosphaeria maculans

NCBI taxonomy Id: 985895
Other names: L. maculans JN3, Leptosphaeria maculans JN3, Leptosphaeria maculans v23.1.3

Send network to Cytoscape

Export your current network:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEMA_P017250.1	LEMA_P051650.1	E5AAA4	E4ZMB0	Uncharacterized protein.	Similar to DENN (AEX-3) domain protein.	0.503
LEMA_P017250.1	LEMA_P107430.1	E5AAA4	E4ZYF2	Uncharacterized protein.	Similar to C2H2 finger domain protein.	0.509
LEMA_P051650.1	LEMA_P017250.1	E4ZMB0	E5AAA4	Similar to DENN (AEX-3) domain protein.	Uncharacterized protein.	0.503
LEMA_P051650.1	LEMA_P100310.1	E4ZMB0	E5A040	Similar to DENN (AEX-3) domain protein.	Uncharacterized protein.	0.448
LEMA_P051650.1	LEMA_P107430.1	E4ZMB0	E4ZYF2	Similar to DENN (AEX-3) domain protein.	Similar to C2H2 finger domain protein.	0.454
LEMA_P100310.1	LEMA_P051650.1	E5A040	E4ZMB0	Uncharacterized protein.	Similar to DENN (AEX-3) domain protein.	0.448
LEMA_P107430.1	LEMA_P017250.1	E4ZYF2	E5AAA4	Similar to C2H2 finger domain protein.	Uncharacterized protein.	0.509
LEMA_P107430.1	LEMA_P051650.1	E4ZYF2	E4ZMB0	Similar to C2H2 finger domain protein.	Similar to DENN (AEX-3) domain protein.	0.454