(27 nodes) Positive regulation of cell cycle process network (Leptosphaeria maculans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEMA_P022560.1	RRM domain-containing protein. (615 aa)
	LEMA_P092890.1	Similar to cell division cycle protein Cdc20. (603 aa)
	LEMA_P089940.1	Uncharacterized protein. (440 aa)
	LEMA_P109940.1	Uncharacterized protein. (429 aa)
	LEMA_P024780.1	Serine/threonine-protein kinase. (885 aa)
	LEMA_P031980.1	Similar to protein bimA. (818 aa)
	LEMA_P114440.1	Similar to anaphase-promoting complex subunit Apc5. (831 aa)
	LEMA_P120350.1	Uncharacterized protein. (281 aa)
	LEMA_P120340.1	Similar to anaphase-promoting complex subunit apc11. (109 aa)
	LEMA_P071110.1	Similar to G1/S regulator NimO. (606 aa)
	E5R542_LEPMJ	mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway. (47 aa)
	LEMA_P008170.1	Similar to M-phase inducer phosphatase. (616 aa)
	LEMA_P006080.1	Similar to cell cycle protein kinase. (459 aa)
	LEMA_P005510.1	Similar to flap structure-specific endonuclease. (935 aa)
	LEMA_P003740.1	Similar to anaphase-promoting complex subunit cut9. (638 aa)
	LEMA_P019800.1	Uncharacterized protein. (113 aa)
	LEMA_P089290.1	Similar to MAP kinase kinase (Pbs2). (728 aa)
	LEMA_P013180.1	Similar to cell division cycle protein 23 homolog. (629 aa)
	LEMA_P051230.1	Similar to TPR domain containing protein. (387 aa)
	LEMA_P042650.1	Uncharacterized protein. (137 aa)
	LEMA_P042660.1	Uncharacterized protein. (260 aa)
	LEMA_P041230.1	Similar to meiosis-specific APC/C activator protein AMA1. (940 aa)
	LEMA_P124530.1	Serine/threonine-protein phosphatase. (507 aa)
	LEMA_P057990.1	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (545 aa)
	LEMA_P084780.1	Spindle pole body component. (922 aa)
	LEMA_P082470.1	Zds_C domain-containing protein. (1283 aa)
	LEMA_P079820.1	TYR_PHOSPHATASE_2 domain-containing protein. (801 aa)

Your Current Organism:

Leptosphaeria maculans

NCBI taxonomy Id: 985895
Other names: L. maculans JN3, Leptosphaeria maculans JN3, Leptosphaeria maculans v23.1.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LEMA_P003740.1	LEMA_P013180.1	E5AEE8	E5A947	Similar to anaphase-promoting complex subunit cut9.	Similar to cell division cycle protein 23 homolog.	0.999
LEMA_P003740.1	LEMA_P024780.1	E5AEE8	E4ZXB6	Similar to anaphase-promoting complex subunit cut9.	Serine/threonine-protein kinase.	0.911
LEMA_P003740.1	LEMA_P031980.1	E5AEE8	E4ZWS0	Similar to anaphase-promoting complex subunit cut9.	Similar to protein bimA.	0.999
LEMA_P003740.1	LEMA_P041230.1	E5AEE8	E4ZPJ7	Similar to anaphase-promoting complex subunit cut9.	Similar to meiosis-specific APC/C activator protein AMA1.	0.977
LEMA_P003740.1	LEMA_P079820.1	E5AEE8	E5A545	Similar to anaphase-promoting complex subunit cut9.	TYR_PHOSPHATASE_2 domain-containing protein.	0.836
LEMA_P003740.1	LEMA_P092890.1	E5AEE8	E5A2T4	Similar to anaphase-promoting complex subunit cut9.	Similar to cell division cycle protein Cdc20.	0.981
LEMA_P003740.1	LEMA_P114440.1	E5AEE8	E4ZUF0	Similar to anaphase-promoting complex subunit cut9.	Similar to anaphase-promoting complex subunit Apc5.	0.999
LEMA_P003740.1	LEMA_P120340.1	E5AEE8	E4ZSV5	Similar to anaphase-promoting complex subunit cut9.	Similar to anaphase-promoting complex subunit apc11.	0.997
LEMA_P003740.1	LEMA_P120350.1	E5AEE8	E4ZSV6	Similar to anaphase-promoting complex subunit cut9.	Uncharacterized protein.	0.978
LEMA_P003740.1	LEMA_P124530.1	E5AEE8	E4ZQ53	Similar to anaphase-promoting complex subunit cut9.	Serine/threonine-protein phosphatase.	0.710
LEMA_P006080.1	LEMA_P024780.1	E5AF32	E4ZXB6	Similar to cell cycle protein kinase.	Serine/threonine-protein kinase.	0.731
LEMA_P006080.1	LEMA_P071110.1	E5AF32	E4ZK08	Similar to cell cycle protein kinase.	Similar to G1/S regulator NimO.	0.999
LEMA_P006080.1	LEMA_P079820.1	E5AF32	E5A545	Similar to cell cycle protein kinase.	TYR_PHOSPHATASE_2 domain-containing protein.	0.510
LEMA_P008170.1	LEMA_P024780.1	E5AFP1	E4ZXB6	Similar to M-phase inducer phosphatase.	Serine/threonine-protein kinase.	0.998
LEMA_P008170.1	LEMA_P031980.1	E5AFP1	E4ZWS0	Similar to M-phase inducer phosphatase.	Similar to protein bimA.	0.450
LEMA_P008170.1	LEMA_P041230.1	E5AFP1	E4ZPJ7	Similar to M-phase inducer phosphatase.	Similar to meiosis-specific APC/C activator protein AMA1.	0.619
LEMA_P008170.1	LEMA_P079820.1	E5AFP1	E5A545	Similar to M-phase inducer phosphatase.	TYR_PHOSPHATASE_2 domain-containing protein.	0.853
LEMA_P008170.1	LEMA_P089290.1	E5AFP1	E5A7U5	Similar to M-phase inducer phosphatase.	Similar to MAP kinase kinase (Pbs2).	0.740
LEMA_P008170.1	LEMA_P092890.1	E5AFP1	E5A2T4	Similar to M-phase inducer phosphatase.	Similar to cell division cycle protein Cdc20.	0.619
LEMA_P013180.1	LEMA_P003740.1	E5A947	E5AEE8	Similar to cell division cycle protein 23 homolog.	Similar to anaphase-promoting complex subunit cut9.	0.999