(30 nodes) Ether lipid metabolism network (Leptosphaeria maculans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LEMA_P119710.1	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family. (827 aa)
	LEMA_P064230.1	Similar to SWIB/MDM2 domain-containing protein. (285 aa)
	LEMA_P067780.1	Similar to membrane bound C2 domain protein (Vp115). (1394 aa)
	LEMA_P072220.1	Predicted protein. (1140 aa)
	MED19	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (396 aa)
	LEMA_P038770.1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (403 aa)
	LEMA_P041690.1	Similar to meiotically up-regulated gene 190 protein. (1412 aa)
	LEMA_P123400.1	Predicted protein. (399 aa)
	LEMA_P114340.1	Similar to sn-1,2-diacylglycerol cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (408 aa)
	LEMA_P116030.1	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family. (875 aa)
	LEMA_P024620.1	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (331 aa)
	E4ZXA1_LEPMJ	Predicted protein. (43 aa)
	LEMA_P102160.1	Uncharacterized protein. (1318 aa)
	LEMA_P090340.1	Uncharacterized protein. (703 aa)
	LEMA_P091840.1	Predicted protein. (137 aa)
	LEMA_P091850.1	Uncharacterized protein. (362 aa)
	LEMA_P092680.1	Uncharacterized protein. (491 aa)
	LEMA_P094850.1	CRAL-TRIO domain-containing protein. (453 aa)
	LEMA_P095690.1	Uncharacterized protein. (390 aa)
	LEMA_P097720.1	CRAL-TRIO domain-containing protein. (561 aa)
	LEMA_P079880.1	Phospholipase. (1043 aa)
	LEMA_P083630.1	Lysophospholipase. (822 aa)
	LEMA_P084010.1	Similar to potassium ion channel Yvc1. (715 aa)
	LEMA_P084400.1	GYF domain-containing protein. (1107 aa)
	LEMA_P085330.1	Phospholipase. (848 aa)
	LEMA_P076580.1	Predicted protein. (156 aa)
	PAC1	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family. (463 aa)
	LEMA_P019820.1	Putative phospholipase. (590 aa)
	LEMA_P020120.1	Similar to MBOAT family protein; Belongs to the membrane-bound acyltransferase family. (579 aa)
	LEMA_P001340.1	Similar to phospholipase D1. (1912 aa)

Your Current Organism:

Leptosphaeria maculans

NCBI taxonomy Id: 985895
Other names: L. maculans JN3, Leptosphaeria maculans JN3, Leptosphaeria maculans v23.1.3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E4ZXA1_LEPMJ	LEMA_P001340.1	E4ZXA1	E5ADQ8	Predicted protein.	Similar to phospholipase D1.	0.733
E4ZXA1_LEPMJ	LEMA_P020120.1	E4ZXA1	E5AB41	Predicted protein.	Similar to MBOAT family protein; Belongs to the membrane-bound acyltransferase family.	0.754
E4ZXA1_LEPMJ	LEMA_P079880.1	E4ZXA1	E5A551	Predicted protein.	Phospholipase.	0.733
E4ZXA1_LEPMJ	LEMA_P083630.1	E4ZXA1	E5A679	Predicted protein.	Lysophospholipase.	0.703
E4ZXA1_LEPMJ	LEMA_P085330.1	E4ZXA1	E5A6P9	Predicted protein.	Phospholipase.	0.733
E4ZXA1_LEPMJ	LEMA_P114340.1	E4ZXA1	E4ZUE0	Predicted protein.	Similar to sn-1,2-diacylglycerol cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.701
E4ZXA1_LEPMJ	LEMA_P119710.1	E4ZXA1	E4ZT49	Predicted protein.	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family.	0.698
LEMA_P001340.1	E4ZXA1_LEPMJ	E5ADQ8	E4ZXA1	Similar to phospholipase D1.	Predicted protein.	0.733
LEMA_P001340.1	LEMA_P020120.1	E5ADQ8	E5AB41	Similar to phospholipase D1.	Similar to MBOAT family protein; Belongs to the membrane-bound acyltransferase family.	0.785
LEMA_P001340.1	LEMA_P024620.1	E5ADQ8	E4ZXA0	Similar to phospholipase D1.	Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.733
LEMA_P001340.1	LEMA_P079880.1	E5ADQ8	E5A551	Similar to phospholipase D1.	Phospholipase.	0.775
LEMA_P001340.1	LEMA_P083630.1	E5ADQ8	E5A679	Similar to phospholipase D1.	Lysophospholipase.	0.763
LEMA_P001340.1	LEMA_P085330.1	E5ADQ8	E5A6P9	Similar to phospholipase D1.	Phospholipase.	0.767
LEMA_P001340.1	LEMA_P094850.1	E5ADQ8	E5A363	Similar to phospholipase D1.	CRAL-TRIO domain-containing protein.	0.728
LEMA_P001340.1	LEMA_P097720.1	E5ADQ8	E5A418	Similar to phospholipase D1.	CRAL-TRIO domain-containing protein.	0.460
LEMA_P001340.1	LEMA_P114340.1	E5ADQ8	E4ZUE0	Similar to phospholipase D1.	Similar to sn-1,2-diacylglycerol cholinephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.795
LEMA_P001340.1	LEMA_P116030.1	E5ADQ8	E4ZUV9	Similar to phospholipase D1.	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family.	0.451
LEMA_P001340.1	LEMA_P119710.1	E5ADQ8	E4ZT49	Similar to phospholipase D1.	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family.	0.779
LEMA_P019820.1	LEMA_P083630.1	E5AB11	E5A679	Putative phospholipase.	Lysophospholipase.	0.778
LEMA_P019820.1	LEMA_P090340.1	E5AB11	E5A1Q8	Putative phospholipase.	Uncharacterized protein.	0.769