5 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POC1A	POC1 centriolar protein A. (407 aa)
	OSTF1	Osteoclast stimulating factor 1. (214 aa)
	HAGHL	Hydroxyacylglutathione hydrolase like. (283 aa)
	ASTE1	Asteroid homolog 1. (677 aa)
	RBMS1	RNA binding motif single stranded interacting protein 1. (419 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASTE1	POC1A	ENSCHIP00000024730	ENSCHIP00000001395	Asteroid homolog 1.	POC1 centriolar protein A.	0.644
HAGHL	POC1A	ENSCHIP00000011088	ENSCHIP00000001395	Hydroxyacylglutathione hydrolase like.	POC1 centriolar protein A.	0.700
OSTF1	RBMS1	ENSCHIP00000010448	ENSCHIP00000027571	Osteoclast stimulating factor 1.	RNA binding motif single stranded interacting protein 1.	0.558
POC1A	ASTE1	ENSCHIP00000001395	ENSCHIP00000024730	POC1 centriolar protein A.	Asteroid homolog 1.	0.644
POC1A	HAGHL	ENSCHIP00000001395	ENSCHIP00000011088	POC1 centriolar protein A.	Hydroxyacylglutathione hydrolase like.	0.700
RBMS1	OSTF1	ENSCHIP00000027571	ENSCHIP00000010448	RNA binding motif single stranded interacting protein 1.	Osteoclast stimulating factor 1.	0.558