(6 nodes) Mixed, incl. High mobility group protein HMGA, and LMSTEN motif network (Capra hircus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HMGA1	High mobility group AT-hook 1. (105 aa)
	LIN28B	Lin-28 homolog B. (255 aa)
	HMGA2	Uncharacterized protein. (104 aa)
	IGF2BP2	Insulin like growth factor 2 mRNA binding protein 2. (599 aa)
	MYBL1	MYB proto-oncogene like 1. (748 aa)
	TUT4	Terminal uridylyl transferase 4. (1660 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HMGA1	HMGA2	ENSCHIP00000007483	ENSCHIP00000011914	High mobility group AT-hook 1.	Uncharacterized protein.	0.780
HMGA1	IGF2BP2	ENSCHIP00000007483	ENSCHIP00000014075	High mobility group AT-hook 1.	Insulin like growth factor 2 mRNA binding protein 2.	0.528
HMGA1	LIN28B	ENSCHIP00000007483	ENSCHIP00000007713	High mobility group AT-hook 1.	Lin-28 homolog B.	0.449
HMGA1	MYBL1	ENSCHIP00000007483	ENSCHIP00000025749	High mobility group AT-hook 1.	MYB proto-oncogene like 1.	0.799
HMGA2	HMGA1	ENSCHIP00000011914	ENSCHIP00000007483	Uncharacterized protein.	High mobility group AT-hook 1.	0.780
HMGA2	IGF2BP2	ENSCHIP00000011914	ENSCHIP00000014075	Uncharacterized protein.	Insulin like growth factor 2 mRNA binding protein 2.	0.884
HMGA2	LIN28B	ENSCHIP00000011914	ENSCHIP00000007713	Uncharacterized protein.	Lin-28 homolog B.	0.793
IGF2BP2	HMGA1	ENSCHIP00000014075	ENSCHIP00000007483	Insulin like growth factor 2 mRNA binding protein 2.	High mobility group AT-hook 1.	0.528
IGF2BP2	HMGA2	ENSCHIP00000014075	ENSCHIP00000011914	Insulin like growth factor 2 mRNA binding protein 2.	Uncharacterized protein.	0.884
IGF2BP2	LIN28B	ENSCHIP00000014075	ENSCHIP00000007713	Insulin like growth factor 2 mRNA binding protein 2.	Lin-28 homolog B.	0.647
LIN28B	HMGA1	ENSCHIP00000007713	ENSCHIP00000007483	Lin-28 homolog B.	High mobility group AT-hook 1.	0.449
LIN28B	HMGA2	ENSCHIP00000007713	ENSCHIP00000011914	Lin-28 homolog B.	Uncharacterized protein.	0.793
LIN28B	IGF2BP2	ENSCHIP00000007713	ENSCHIP00000014075	Lin-28 homolog B.	Insulin like growth factor 2 mRNA binding protein 2.	0.647
LIN28B	TUT4	ENSCHIP00000007713	ENSCHIP00000028427	Lin-28 homolog B.	Terminal uridylyl transferase 4.	0.720
MYBL1	HMGA1	ENSCHIP00000025749	ENSCHIP00000007483	MYB proto-oncogene like 1.	High mobility group AT-hook 1.	0.799
TUT4	LIN28B	ENSCHIP00000028427	ENSCHIP00000007713	Terminal uridylyl transferase 4.	Lin-28 homolog B.	0.720