14 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FANCM	FA complementation group M. (2043 aa)
	RAD51B	RAD51 paralog B. (270 aa)
	MSH6	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1361 aa)
	GEN1	GEN1 Holliday junction 5' flap endonuclease. (931 aa)
	MEN1	Menin 1. (609 aa)
	YY1	YY1 transcription factor. (415 aa)
	BLM	BLM RecQ like helicase. (1429 aa)
	ENSCHIP00000003676	RECA_2 domain-containing protein. (278 aa)
	XRCC2	X-ray repair cross complementing 2. (280 aa)
	MSH2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (946 aa)
	ABL1	Tyrosine-protein kinase. (1151 aa)
	RAD51D	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (338 aa)
	RAD51C	RAD51 paralog C. (371 aa)
	WRN	WRN RecQ like helicase. (1405 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLM	ENSCHIP00000003676	ENSCHIP00000006552	ENSCHIP00000003676	BLM RecQ like helicase.	RECA_2 domain-containing protein.	0.770
BLM	FANCM	ENSCHIP00000006552	ENSCHIP00000013958	BLM RecQ like helicase.	FA complementation group M.	0.999
BLM	GEN1	ENSCHIP00000006552	ENSCHIP00000011906	BLM RecQ like helicase.	GEN1 Holliday junction 5' flap endonuclease.	0.723
BLM	MSH2	ENSCHIP00000006552	ENSCHIP00000025009	BLM RecQ like helicase.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.711
BLM	MSH6	ENSCHIP00000006552	ENSCHIP00000012330	BLM RecQ like helicase.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.898
BLM	RAD51B	ENSCHIP00000006552	ENSCHIP00000012969	BLM RecQ like helicase.	RAD51 paralog B.	0.854
BLM	RAD51C	ENSCHIP00000006552	ENSCHIP00000013986	BLM RecQ like helicase.	RAD51 paralog C.	0.846
BLM	RAD51D	ENSCHIP00000006552	ENSCHIP00000021188	BLM RecQ like helicase.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.818
BLM	WRN	ENSCHIP00000006552	ENSCHIP00000013642	BLM RecQ like helicase.	WRN RecQ like helicase.	0.742
BLM	XRCC2	ENSCHIP00000006552	ENSCHIP00000028876	BLM RecQ like helicase.	X-ray repair cross complementing 2.	0.637
ENSCHIP00000003676	BLM	ENSCHIP00000003676	ENSCHIP00000006552	RECA_2 domain-containing protein.	BLM RecQ like helicase.	0.770
ENSCHIP00000003676	FANCM	ENSCHIP00000003676	ENSCHIP00000013958	RECA_2 domain-containing protein.	FA complementation group M.	0.912
ENSCHIP00000003676	GEN1	ENSCHIP00000003676	ENSCHIP00000011906	RECA_2 domain-containing protein.	GEN1 Holliday junction 5' flap endonuclease.	0.525
ENSCHIP00000003676	MSH2	ENSCHIP00000003676	ENSCHIP00000025009	RECA_2 domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.446
ENSCHIP00000003676	MSH6	ENSCHIP00000003676	ENSCHIP00000012330	RECA_2 domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.445
ENSCHIP00000003676	RAD51B	ENSCHIP00000003676	ENSCHIP00000012969	RECA_2 domain-containing protein.	RAD51 paralog B.	0.850
ENSCHIP00000003676	RAD51C	ENSCHIP00000003676	ENSCHIP00000013986	RECA_2 domain-containing protein.	RAD51 paralog C.	0.881
ENSCHIP00000003676	WRN	ENSCHIP00000003676	ENSCHIP00000013642	RECA_2 domain-containing protein.	WRN RecQ like helicase.	0.942
ENSCHIP00000003676	XRCC2	ENSCHIP00000003676	ENSCHIP00000028876	RECA_2 domain-containing protein.	X-ray repair cross complementing 2.	0.930
FANCM	BLM	ENSCHIP00000013958	ENSCHIP00000006552	FA complementation group M.	BLM RecQ like helicase.	0.999