26 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PUF60	Poly(U) binding splicing factor 60. (601 aa)
	CELF5	CUGBP Elav-like family member 5. (479 aa)
	SNRPC	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (152 aa)
	YTHDC1	YTH domain containing 1. (698 aa)
	CELF4	CUGBP Elav-like family member 4. (475 aa)
	LOC102174442	Uncharacterized protein. (284 aa)
	SFSWAP	Splicing factor SWAP. (994 aa)
	ENSCHIP00000005003	Uncharacterized protein. (345 aa)
	CELF6	Uncharacterized protein. (459 aa)
	LOC102172789	Uncharacterized protein. (376 aa)
	PRPF39	Pre-mRNA processing factor 39. (667 aa)
	SRSF1	Uncharacterized protein. (248 aa)
	LOC102172949	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
	LUC7L3	LUC7 like 3 pre-mRNA splicing factor. (491 aa)
	SLU7	SLU7 homolog, splicing factor. (586 aa)
	CELF2	CUGBP Elav-like family member 2. (521 aa)
	SRSF6	Uncharacterized protein. (345 aa)
	PSIP1	PWWP domain-containing protein. (530 aa)
	NOL3	Nucleolar protein 3. (230 aa)
	LUC7L	LUC7 like. (369 aa)
	SETX	Senataxin. (2659 aa)
	LOC102190239	PWWP domain-containing protein. (512 aa)
	KHDC4	KH domain containing 4, pre-mRNA splicing factor. (614 aa)
	CELF1	CUGBP Elav-like family member 1. (513 aa)
	PTBP2	Polypyrimidine tract binding protein 2. (537 aa)
	CELF3	CUGBP Elav-like family member 3. (462 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF1	PTBP2	ENSCHIP00000029485	ENSCHIP00000030037	CUGBP Elav-like family member 1.	Polypyrimidine tract binding protein 2.	0.435
CELF1	SRSF1	ENSCHIP00000029485	ENSCHIP00000007207	CUGBP Elav-like family member 1.	Uncharacterized protein.	0.478
CELF1	SRSF6	ENSCHIP00000029485	ENSCHIP00000015133	CUGBP Elav-like family member 1.	Uncharacterized protein.	0.488
CELF2	PTBP2	ENSCHIP00000014324	ENSCHIP00000030037	CUGBP Elav-like family member 2.	Polypyrimidine tract binding protein 2.	0.466
CELF3	LUC7L	ENSCHIP00000031555	ENSCHIP00000017389	CUGBP Elav-like family member 3.	LUC7 like.	0.547
CELF3	PTBP2	ENSCHIP00000031555	ENSCHIP00000030037	CUGBP Elav-like family member 3.	Polypyrimidine tract binding protein 2.	0.591
CELF4	SRSF1	ENSCHIP00000003204	ENSCHIP00000007207	CUGBP Elav-like family member 4.	Uncharacterized protein.	0.415
ENSCHIP00000005003	LOC102172789	ENSCHIP00000005003	ENSCHIP00000005834	Uncharacterized protein.	Uncharacterized protein.	0.518
ENSCHIP00000005003	LOC102172949	ENSCHIP00000005003	ENSCHIP00000009102	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.475
ENSCHIP00000005003	LUC7L	ENSCHIP00000005003	ENSCHIP00000017389	Uncharacterized protein.	LUC7 like.	0.518
ENSCHIP00000005003	LUC7L3	ENSCHIP00000005003	ENSCHIP00000010027	Uncharacterized protein.	LUC7 like 3 pre-mRNA splicing factor.	0.424
ENSCHIP00000005003	PRPF39	ENSCHIP00000005003	ENSCHIP00000006214	Uncharacterized protein.	Pre-mRNA processing factor 39.	0.434
ENSCHIP00000005003	PUF60	ENSCHIP00000005003	ENSCHIP00000001191	Uncharacterized protein.	Poly(U) binding splicing factor 60.	0.439
ENSCHIP00000005003	SLU7	ENSCHIP00000005003	ENSCHIP00000011757	Uncharacterized protein.	SLU7 homolog, splicing factor.	0.603
ENSCHIP00000005003	SNRPC	ENSCHIP00000005003	ENSCHIP00000002214	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.475
ENSCHIP00000005003	SRSF1	ENSCHIP00000005003	ENSCHIP00000007207	Uncharacterized protein.	Uncharacterized protein.	0.705
KHDC4	LUC7L3	ENSCHIP00000026767	ENSCHIP00000010027	KH domain containing 4, pre-mRNA splicing factor.	LUC7 like 3 pre-mRNA splicing factor.	0.468
LOC102172789	ENSCHIP00000005003	ENSCHIP00000005834	ENSCHIP00000005003	Uncharacterized protein.	Uncharacterized protein.	0.518
LOC102172789	LOC102172949	ENSCHIP00000005834	ENSCHIP00000009102	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.836
LOC102172789	LUC7L3	ENSCHIP00000005834	ENSCHIP00000010027	Uncharacterized protein.	LUC7 like 3 pre-mRNA splicing factor.	0.498