STRINGSTRING
ENSCHIP00000015364 ENSCHIP00000015364 PRPF18 PRPF18 TXNL4B TXNL4B LSM5-2 LSM5-2 ENSCHIP00000001936 ENSCHIP00000001936 ENSCHIP00000002037 ENSCHIP00000002037 SNRNP27-2 SNRNP27-2 ENSCHIP00000004696 ENSCHIP00000004696 SNRNP40 SNRNP40 RBM42 RBM42 ENSCHIP00000005868 ENSCHIP00000005868 LSM6 LSM6 LSM4 LSM4 EFTUD2 EFTUD2 ENSCHIP00000010295 ENSCHIP00000010295 LOC102174705 LOC102174705 ENSCHIP00000011658 ENSCHIP00000011658 LSM8 LSM8 ZMAT2 ZMAT2 ENSCHIP00000013879 ENSCHIP00000013879 PRPF3 PRPF3 SNRPD2 SNRPD2 SNU13 SNU13 LSM2 LSM2 SART1 SART1 SNRPD2-2 SNRPD2-2 SNRPF SNRPF SNRPN SNRPN PRPF8 PRPF8 PRPF6 PRPF6 DDX23 DDX23 TXNL4A TXNL4A LSM5-3 LSM5-3 SNRNP200 SNRNP200 USP39 USP39 PRPF31 PRPF31 LSM5-4 LSM5-4 ENSCHIP00000025506 ENSCHIP00000025506 ENSCHIP00000027702 ENSCHIP00000027702 LSM7 LSM7 SNRPE SNRPE ENSCHIP00000028830 ENSCHIP00000028830 SNRNP27 SNRNP27 LSM5 LSM5 ENSCHIP00000029494 ENSCHIP00000029494 LSM3 LSM3 PRPF4 PRPF4 SNRPB SNRPB ENSCHIP00000032015 ENSCHIP00000032015 C19orf54 C19orf54 SNRPA SNRPA ENSCHIP00000033192 ENSCHIP00000033192
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSCHIP00000015364Ribosomal_L7Ae domain-containing protein. (112 aa)
PRPF18SFM domain-containing protein. (351 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
LSM5-2U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
ENSCHIP00000001936Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
ENSCHIP00000002037Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
SNRNP27-2SNRNP27 domain-containing protein. (152 aa)
ENSCHIP00000004696Sm domain-containing protein. (59 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
RBM42RNA binding motif protein 42. (477 aa)
ENSCHIP00000005868Sm domain-containing protein. (52 aa)
LSM6Sm domain-containing protein. (80 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (151 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
ENSCHIP00000010295annotation not available (71 aa)
LOC102174705Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
ENSCHIP00000011658Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (79 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
ZMAT2Zinc finger matrin-type 2. (199 aa)
ENSCHIP00000013879SNRNP27 domain-containing protein. (125 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (119 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (129 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (796 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (96 aa)
SNRPFSm domain-containing protein. (68 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
PRPF6Pre-mRNA processing factor 6. (948 aa)
DDX23DEAD-box helicase 23. (820 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LSM5-3U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (73 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2146 aa)
USP39Ubiquitin specific peptidase 39. (565 aa)
PRPF31Pre-mRNA processing factor 31. (499 aa)
LSM5-4U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
ENSCHIP00000025506Uncharacterized protein. (59 aa)
ENSCHIP00000027702Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (68 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
ENSCHIP00000028830Sm domain-containing protein. (76 aa)
SNRNP27Small nuclear ribonucleoprotein U4/U6.U5 subunit 27. (147 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
ENSCHIP00000029494Sm domain-containing protein. (73 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
PRPF4WD_REPEATS_REGION domain-containing protein. (522 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (231 aa)
ENSCHIP00000032015SNRNP27 domain-containing protein. (124 aa)
C19orf54Chromosome 19 open reading frame 54. (348 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (282 aa)
ENSCHIP00000033192WD_REPEATS_REGION domain-containing protein. (219 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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