STRINGSTRING
SNRPD3 SNRPD3 PPIL2 PPIL2 ZCCHC8 ZCCHC8 ENSCHIP00000001288 ENSCHIP00000001288 RBM44 RBM44 ENSCHIP00000002186 ENSCHIP00000002186 HNRNPU HNRNPU RBMXL2 RBMXL2 SNRPD1 SNRPD1 ESS2 ESS2 LOC102174442 LOC102174442 LOC102177976 LOC102177976 ENSCHIP00000004875 ENSCHIP00000004875 SNRPB2 SNRPB2 DHX8 DHX8 SNRNP40 SNRNP40 DDX41 DDX41 SF3B6 SF3B6 SNW1 SNW1 ENSCHIP00000006634 ENSCHIP00000006634 SRSF1 SRSF1 SF3B2 SF3B2 SRRM2 SRRM2 XAB2 XAB2 FRG1 FRG1 EFTUD2 EFTUD2 DDX5 DDX5 LOC102189034 LOC102189034 RBM8A RBM8A WDR25 WDR25 PPWD1 PPWD1 EIF4A2 EIF4A2 LOC102184721 LOC102184721 SNRPG SNRPG PPIE PPIE ENSCHIP00000009900 ENSCHIP00000009900 U2AF1 U2AF1 ENSCHIP00000010745 ENSCHIP00000010745 CRNKL1 CRNKL1 ENSCHIP00000010820 ENSCHIP00000010820 CWC15 CWC15 ENSCHIP00000011277 ENSCHIP00000011277 SLU7 SLU7 PPIL1 PPIL1 PLRG1 PLRG1 PRPF4B PRPF4B ENSCHIP00000012479 ENSCHIP00000012479 SRRM1 SRRM1 ENSCHIP00000013274 ENSCHIP00000013274 HNRNPK HNRNPK ENSCHIP00000013837 ENSCHIP00000013837 SF3B1 SF3B1 BUD31 BUD31 MAGOH MAGOH RBM22 RBM22 SNRPD2 SNRPD2 ENSCHIP00000015003 ENSCHIP00000015003 LSM2 LSM2 CWC27 CWC27 SNRPA1 SNRPA1 SART1 SART1 SNRPD2-2 SNRPD2-2 PNN PNN LOC108636227 LOC108636227 SNRPF SNRPF TFIP11 TFIP11 CWC22 CWC22 SNRPN SNRPN PRPF8 PRPF8 CDC40 CDC40 ENSCHIP00000018363 ENSCHIP00000018363 PRPF6 PRPF6 SF3A2 SF3A2 PRPF19 PRPF19 SF3A1 SF3A1 DDX23 DDX23 GPATCH1 GPATCH1 PPIL3 PPIL3 SF3B3 SF3B3 ENSCHIP00000022242 ENSCHIP00000022242 ENSCHIP00000022338 ENSCHIP00000022338 SF3A3 SF3A3 SNRNP200 SNRNP200 SYF2 SYF2 LOC102175542 LOC102175542 SRRM1-2 SRRM1-2 CDC5L CDC5L PABPC1 PABPC1 MAGOHB MAGOHB DHX38 DHX38 CACTIN CACTIN RALY RALY C19orf54 C19orf54 ENSCHIP00000031551 ENSCHIP00000031551 WDR83 WDR83 SNRPB SNRPB AQR AQR HNRNPA1 HNRNPA1 SYNCRIP SYNCRIP LSM3 LSM3 ENSCHIP00000029494 ENSCHIP00000029494 MTREX MTREX EIF4A3 EIF4A3 HNRNPR HNRNPR ENSCHIP00000028361 ENSCHIP00000028361 ENSCHIP00000025506 ENSCHIP00000025506 DHX35 DHX35 BCAS2 BCAS2 ENSCHIP00000026270 ENSCHIP00000026270 LSM7 LSM7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PPIL2Peptidylprolyl isomerase like 2. (522 aa)
ZCCHC8Zinc finger CCHC-type containing 8. (710 aa)
ENSCHIP00000001288Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
RBM44RNA binding motif protein 44. (1081 aa)
ENSCHIP00000002186Uncharacterized protein. (123 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (806 aa)
RBMXL2RRM domain-containing protein. (395 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
ESS2Ess-2 splicing factor homolog. (480 aa)
LOC102174442Uncharacterized protein. (284 aa)
LOC102177976Uncharacterized protein. (320 aa)
ENSCHIP00000004875Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
DHX8DEAH-box helicase 8. (1216 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
DDX41DEAD-box helicase 41. (622 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
SNW1SNW domain containing 1. (536 aa)
ENSCHIP00000006634Uncharacterized protein. (132 aa)
SRSF1Uncharacterized protein. (248 aa)
SF3B2Splicing factor 3b subunit 2. (895 aa)
SRRM2Serine/arginine repetitive matrix 2. (2680 aa)
XAB2XPA binding protein 2. (892 aa)
FRG1Uncharacterized protein. (258 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (972 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (622 aa)
LOC102189034Uncharacterized protein. (320 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
WDR25WD repeat domain 25. (557 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (720 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (408 aa)
LOC102184721RRM domain-containing protein. (362 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (292 aa)
ENSCHIP00000009900Uncharacterized protein. (130 aa)
U2AF1Uncharacterized protein. (237 aa)
ENSCHIP00000010745Uncharacterized protein. (120 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (693 aa)
ENSCHIP00000010820Uncharacterized protein. (107 aa)
CWC15CWC15 spliceosome associated protein homolog. (231 aa)
ENSCHIP00000011277Uncharacterized protein. (113 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
PLRG1Pleiotropic regulator 1. (514 aa)
PRPF4BPre-mRNA processing factor 4B. (1072 aa)
ENSCHIP00000012479Uncharacterized protein. (215 aa)
SRRM1Serine and arginine repetitive matrix 1. (927 aa)
ENSCHIP00000013274Sm domain-containing protein. (87 aa)
HNRNPKUncharacterized protein. (454 aa)
ENSCHIP00000013837Uncharacterized protein. (227 aa)
SF3B1Splicing factor 3b subunit 1. (1304 aa)
BUD31BUD31 homolog. (144 aa)
MAGOHUncharacterized protein. (146 aa)
RBM22RNA binding motif protein 22. (420 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (119 aa)
ENSCHIP00000015003Uncharacterized protein. (348 aa)
LSM2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
CWC27CWC27 spliceosome associated cyclophilin. (473 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (796 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (96 aa)
PNNPinin, desmosome associated protein. (734 aa)
LOC108636227Uncharacterized protein. (463 aa)
SNRPFSm domain-containing protein. (68 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (837 aa)
CWC22CWC22 spliceosome associated protein homolog. (900 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
CDC40Cell division cycle 40. (592 aa)
ENSCHIP00000018363Uncharacterized protein. (331 aa)
PRPF6Pre-mRNA processing factor 6. (948 aa)
SF3A2Splicing factor 3a subunit 2. (477 aa)
PRPF19Pre-mRNA processing factor 19. (504 aa)
SF3A1Splicing factor 3a subunit 1. (808 aa)
DDX23DEAD-box helicase 23. (820 aa)
GPATCH1G-patch domain containing 1. (931 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (155 aa)
SF3B3Splicing factor 3b subunit 3. (1217 aa)
ENSCHIP00000022242Uncharacterized protein. (395 aa)
ENSCHIP00000022338Uncharacterized protein. (300 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2146 aa)
SYF2SYF2 pre-mRNA splicing factor. (243 aa)
LOC102175542Uncharacterized protein. (307 aa)
SRRM1-2PWI domain-containing protein. (141 aa)
CDC5LCell division cycle 5 like. (802 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
MAGOHBUncharacterized protein. (148 aa)
DHX38DEAH-box helicase 38. (1227 aa)
CACTINCactin, spliceosome C complex subunit. (708 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (297 aa)
C19orf54Chromosome 19 open reading frame 54. (348 aa)
ENSCHIP00000031551Uncharacterized protein. (490 aa)
WDR83WD repeat domain 83. (315 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (231 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1471 aa)
HNRNPA1Uncharacterized protein. (320 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (623 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ENSCHIP00000029494Sm domain-containing protein. (73 aa)
MTREXMtr4 exosome RNA helicase. (1042 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (622 aa)
ENSCHIP00000028361Uncharacterized protein. (251 aa)
ENSCHIP00000025506Uncharacterized protein. (59 aa)
DHX35DEAH-box helicase 35. (719 aa)
BCAS2Uncharacterized protein. (225 aa)
ENSCHIP00000026270Sm domain-containing protein. (62 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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