11 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCHIP00000002186	Uncharacterized protein. (123 aa)
	CASC3	CASC3 exon junction complex subunit. (700 aa)
	ENSCHIP00000006634	Uncharacterized protein. (132 aa)
	YJU2	Uncharacterized protein. (320 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2146 aa)
	ENSCHIP00000009900	Uncharacterized protein. (130 aa)
	EIF4A3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
	MAGOHB	Uncharacterized protein. (148 aa)
	CWC25	CWC25 spliceosome associated protein homolog. (425 aa)
	RBM22	RNA binding motif protein 22. (420 aa)
	LOC102173595	Uncharacterized protein. (314 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASC3	CWC25	ENSCHIP00000002799	ENSCHIP00000013770	CASC3 exon junction complex subunit.	CWC25 spliceosome associated protein homolog.	0.683
CASC3	EIF4A3	ENSCHIP00000002799	ENSCHIP00000029017	CASC3 exon junction complex subunit.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.999
CASC3	ENSCHIP00000002186	ENSCHIP00000002799	ENSCHIP00000002186	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.857
CASC3	ENSCHIP00000006634	ENSCHIP00000002799	ENSCHIP00000006634	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.857
CASC3	ENSCHIP00000009900	ENSCHIP00000002799	ENSCHIP00000009900	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.857
CASC3	LOC102173595	ENSCHIP00000002799	ENSCHIP00000016142	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.629
CASC3	MAGOHB	ENSCHIP00000002799	ENSCHIP00000033788	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.953
CASC3	RBM22	ENSCHIP00000002799	ENSCHIP00000014616	CASC3 exon junction complex subunit.	RNA binding motif protein 22.	0.526
CASC3	SNRNP200	ENSCHIP00000002799	ENSCHIP00000022847	CASC3 exon junction complex subunit.	Small nuclear ribonucleoprotein U5 subunit 200.	0.726
CASC3	YJU2	ENSCHIP00000002799	ENSCHIP00000016936	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.629
CWC25	CASC3	ENSCHIP00000013770	ENSCHIP00000002799	CWC25 spliceosome associated protein homolog.	CASC3 exon junction complex subunit.	0.683
CWC25	EIF4A3	ENSCHIP00000013770	ENSCHIP00000029017	CWC25 spliceosome associated protein homolog.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.762
CWC25	LOC102173595	ENSCHIP00000013770	ENSCHIP00000016142	CWC25 spliceosome associated protein homolog.	Uncharacterized protein.	0.975
CWC25	RBM22	ENSCHIP00000013770	ENSCHIP00000014616	CWC25 spliceosome associated protein homolog.	RNA binding motif protein 22.	0.862
CWC25	SNRNP200	ENSCHIP00000013770	ENSCHIP00000022847	CWC25 spliceosome associated protein homolog.	Small nuclear ribonucleoprotein U5 subunit 200.	0.977
CWC25	YJU2	ENSCHIP00000013770	ENSCHIP00000016936	CWC25 spliceosome associated protein homolog.	Uncharacterized protein.	0.996
EIF4A3	CASC3	ENSCHIP00000029017	ENSCHIP00000002799	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	CASC3 exon junction complex subunit.	0.999
EIF4A3	CWC25	ENSCHIP00000029017	ENSCHIP00000013770	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	CWC25 spliceosome associated protein homolog.	0.762
EIF4A3	ENSCHIP00000002186	ENSCHIP00000029017	ENSCHIP00000002186	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.893
EIF4A3	ENSCHIP00000006634	ENSCHIP00000029017	ENSCHIP00000006634	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.893