STRINGSTRING
ZC3H11A ZC3H11A MAGOHB MAGOHB ENSCHIP00000033753 ENSCHIP00000033753 DHX38 DHX38 SYMPK SYMPK NUDT21 NUDT21 THOC5 THOC5 FIP1L1 FIP1L1 LOC102179815 LOC102179815 NCBP2 NCBP2 SRSF11 SRSF11 SRSF9 SRSF9 PAPOLA PAPOLA SREK1-2 SREK1-2 CSTF1 CSTF1 CHTOP CHTOP EIF4A3 EIF4A3 CPSF2 CPSF2 U2AF2 U2AF2 CLP1 CLP1 SRSF4 SRSF4 CPSF4L CPSF4L THOC3 THOC3 FYTTD1 FYTTD1 SRRM1-2 SRRM1-2 PCF11 PCF11 POLDIP3 POLDIP3 NCBP1 NCBP1 NCBP2L NCBP2L ENSCHIP00000021560 ENSCHIP00000021560 ENSCHIP00000021509 ENSCHIP00000021509 ENSCHIP00000021093 ENSCHIP00000021093 SRSF7 SRSF7 WDR33 WDR33 DDX39A DDX39A ENSCHIP00000020093 ENSCHIP00000020093 THOC7 THOC7 ENSCHIP00000018680 ENSCHIP00000018680 THOC2 THOC2 CDC40 CDC40 ENSCHIP00000017731 ENSCHIP00000017731 ALYREF ALYREF CSTF2 CSTF2 SRSF5 SRSF5 CSTF2T CSTF2T CSTF3 CSTF3 C12orf50 C12orf50 CPSF1 CPSF1 SRSF6 SRSF6 LOC102186008 LOC102186008 MAGOH MAGOH THOC1 THOC1 ENSCHIP00000014201 ENSCHIP00000014201 SRRM1 SRRM1 CPSF7 CPSF7 ENSCHIP00000013060 ENSCHIP00000013060 CPSF4 CPSF4 CPSF3 CPSF3 SLU7 SLU7 THOC6 THOC6 SREK1 SREK1 SARNP SARNP U2AF1 U2AF1 ENSCHIP00000009900 ENSCHIP00000009900 PABPN1 PABPN1 RBM8A RBM8A ENSCHIP00000008188 ENSCHIP00000008188 SRSF1 SRSF1 CPSF6 CPSF6 ENSCHIP00000006634 ENSCHIP00000006634 ENSCHIP00000006395 ENSCHIP00000006395 ENSCHIP00000005826 ENSCHIP00000005826 SRSF3 SRSF3 ENSCHIP00000005232 ENSCHIP00000005232 ENSCHIP00000005003 ENSCHIP00000005003 ENSCHIP00000003874 ENSCHIP00000003874 CASC3 CASC3 ENSCHIP00000002186 ENSCHIP00000002186 DDX39B DDX39B U2AF1L4 U2AF1L4 UPF3B UPF3B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ZC3H11AUncharacterized protein. (786 aa)
MAGOHBUncharacterized protein. (148 aa)
ENSCHIP00000033753RRM domain-containing protein. (290 aa)
DHX38DEAH-box helicase 38. (1227 aa)
SYMPKSymplekin. (1272 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
THOC5THO complex 5. (694 aa)
FIP1L1Fip1 domain-containing protein. (568 aa)
LOC102179815Uncharacterized protein. (1577 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
SRSF11Serine and arginine rich splicing factor 11. (429 aa)
SRSF9Serine and arginine rich splicing factor 9. (221 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
SREK1-2RRM domain-containing protein. (100 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
CHTOPChromatin target of PRMT1. (249 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (426 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
SRSF4Serine and arginine rich splicing factor 4. (517 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (153 aa)
THOC3THO complex 3. (351 aa)
FYTTD1Uncharacterized protein. (318 aa)
SRRM1-2PWI domain-containing protein. (141 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1685 aa)
POLDIP3DNA polymerase delta interacting protein 3. (421 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
NCBP2LNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
ENSCHIP00000021560RRM domain-containing protein. (109 aa)
ENSCHIP00000021509Uncharacterized protein. (224 aa)
ENSCHIP00000021093RRM domain-containing protein. (290 aa)
SRSF7Serine and arginine rich splicing factor 7. (238 aa)
WDR33WD repeat domain 33. (1336 aa)
DDX39ADExD-box helicase 39A. (468 aa)
ENSCHIP00000020093Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (131 aa)
THOC7THO complex 7. (203 aa)
ENSCHIP00000018680Smg4_UPF3 domain-containing protein. (472 aa)
THOC2Uncharacterized protein. (1591 aa)
CDC40Cell division cycle 40. (592 aa)
ENSCHIP00000017731SAP domain-containing protein. (183 aa)
ALYREFAly/REF export factor. (267 aa)
CSTF2Cleavage stimulation factor subunit 2. (592 aa)
SRSF5Serine and arginine rich splicing factor 5. (274 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (615 aa)
CSTF3Cleavage stimulation factor subunit 3. (692 aa)
C12orf50Chromosome 12 open reading frame 50. (399 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1415 aa)
SRSF6Uncharacterized protein. (345 aa)
LOC102186008Uncharacterized protein. (312 aa)
MAGOHUncharacterized protein. (146 aa)
THOC1THO complex 1. (657 aa)
ENSCHIP00000014201Uncharacterized protein. (61 aa)
SRRM1Serine and arginine repetitive matrix 1. (927 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
ENSCHIP00000013060RRM domain-containing protein. (295 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (684 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
THOC6THO complex 6. (341 aa)
SREK1RRM domain-containing protein. (414 aa)
SARNPSAP domain containing ribonucleoprotein. (196 aa)
U2AF1Uncharacterized protein. (237 aa)
ENSCHIP00000009900Uncharacterized protein. (130 aa)
PABPN1BCL2L2-PABPN1 readthrough. (306 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
ENSCHIP00000008188Uncharacterized protein. (399 aa)
SRSF1Uncharacterized protein. (248 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (588 aa)
ENSCHIP00000006634Uncharacterized protein. (132 aa)
ENSCHIP00000006395PAP_central domain-containing protein. (68 aa)
ENSCHIP00000005826Uncharacterized protein. (327 aa)
SRSF3RRM domain-containing protein. (124 aa)
ENSCHIP00000005232Lactamase_B domain-containing protein. (114 aa)
ENSCHIP00000005003Uncharacterized protein. (345 aa)
ENSCHIP00000003874Uncharacterized protein. (280 aa)
CASC3CASC3 exon junction complex subunit. (700 aa)
ENSCHIP00000002186Uncharacterized protein. (123 aa)
DDX39BDExD-box helicase 39B. (428 aa)
U2AF1L4Uncharacterized protein. (220 aa)
UPF3BSmg4_UPF3 domain-containing protein. (483 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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