STRINGSTRING
ENSCHIP00000017731 ENSCHIP00000017731 CDC40 CDC40 THOC2 THOC2 ENSCHIP00000018680 ENSCHIP00000018680 THOC7 THOC7 ENSCHIP00000020093 ENSCHIP00000020093 DDX39A DDX39A WDR33 WDR33 SRSF7 SRSF7 LSM11 LSM11 SLBP SLBP ENSCHIP00000021093 ENSCHIP00000021093 ENSCHIP00000021509 ENSCHIP00000021509 ALYREF ALYREF SNRPF SNRPF CSTF2 CSTF2 SRSF5 SRSF5 CSTF2T CSTF2T CSTF3 CSTF3 C12orf50 C12orf50 CPSF1 CPSF1 SRSF6 SRSF6 LOC102186008 LOC102186008 MAGOH MAGOH LOC102187480 LOC102187480 THOC1 THOC1 ENSCHIP00000014201 ENSCHIP00000014201 ENSCHIP00000013274 ENSCHIP00000013274 SRRM1 SRRM1 CPSF7 CPSF7 ENSCHIP00000013060 ENSCHIP00000013060 CPSF4 CPSF4 CPSF3 CPSF3 SLU7 SLU7 ENSCHIP00000011658 ENSCHIP00000011658 THOC6 THOC6 SREK1 SREK1 SARNP SARNP U2AF1 U2AF1 ENSCHIP00000009900 ENSCHIP00000009900 SNRPG SNRPG WDR25 WDR25 PABPN1 PABPN1 ZC3H11A ZC3H11A RBM8A RBM8A ENSCHIP00000008188 ENSCHIP00000008188 SRSF1 SRSF1 CPSF6 CPSF6 ENSCHIP00000006634 ENSCHIP00000006634 ENSCHIP00000006395 ENSCHIP00000006395 ENSCHIP00000005868 ENSCHIP00000005868 ENSCHIP00000005826 ENSCHIP00000005826 SRSF3 SRSF3 ZNF473 ZNF473 LSM10 LSM10 ENSCHIP00000005232 ENSCHIP00000005232 ENSCHIP00000005003 ENSCHIP00000005003 ENSCHIP00000004875 ENSCHIP00000004875 ENSCHIP00000003874 ENSCHIP00000003874 TPRG1L TPRG1L CASC3 CASC3 ENSCHIP00000002186 ENSCHIP00000002186 TPRG1 TPRG1 DDX39B DDX39B ENSCHIP00000002037 ENSCHIP00000002037 ENSCHIP00000001936 ENSCHIP00000001936 ZNF318 ZNF318 ENSCHIP00000001288 ENSCHIP00000001288 U2AF1L4 U2AF1L4 UPF3B UPF3B SNRPD3 SNRPD3 ENSCHIP00000021560 ENSCHIP00000021560 NCBP2L NCBP2L ZC3H13 ZC3H13 NCBP1 NCBP1 POLDIP3 POLDIP3 PCF11 PCF11 SRRM1-2 SRRM1-2 FYTTD1 FYTTD1 THOC3 THOC3 CPSF4L CPSF4L SRSF4 SRSF4 ENSCHIP00000026270 ENSCHIP00000026270 CLP1 CLP1 ENSCHIP00000027702 ENSCHIP00000027702 U2AF2 U2AF2 CPSF2 CPSF2 SNRPE SNRPE EIF4A3 EIF4A3 CHTOP CHTOP CSTF1 CSTF1 SREK1-2 SREK1-2 PAPOLA PAPOLA SRSF9 SRSF9 SRSF11 SRSF11 SNRPB SNRPB NCBP2 NCBP2 LOC102179815 LOC102179815 FIP1L1 FIP1L1 THOC5 THOC5 NUDT21 NUDT21 SYMPK SYMPK DHX38 DHX38 ENSCHIP00000033753 ENSCHIP00000033753 MAGOHB MAGOHB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSCHIP00000017731SAP domain-containing protein. (183 aa)
CDC40Cell division cycle 40. (592 aa)
THOC2Uncharacterized protein. (1591 aa)
ENSCHIP00000018680Smg4_UPF3 domain-containing protein. (472 aa)
THOC7THO complex 7. (203 aa)
ENSCHIP00000020093Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (131 aa)
DDX39ADExD-box helicase 39A. (468 aa)
WDR33WD repeat domain 33. (1336 aa)
SRSF7Serine and arginine rich splicing factor 7. (238 aa)
LSM11LSM11, U7 small nuclear RNA associated. (359 aa)
SLBPStem-loop binding protein. (275 aa)
ENSCHIP00000021093RRM domain-containing protein. (290 aa)
ENSCHIP00000021509Uncharacterized protein. (224 aa)
ALYREFAly/REF export factor. (267 aa)
SNRPFSm domain-containing protein. (68 aa)
CSTF2Cleavage stimulation factor subunit 2. (592 aa)
SRSF5Serine and arginine rich splicing factor 5. (274 aa)
CSTF2TCleavage stimulation factor subunit 2 tau variant. (615 aa)
CSTF3Cleavage stimulation factor subunit 3. (692 aa)
C12orf50Chromosome 12 open reading frame 50. (399 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1415 aa)
SRSF6Uncharacterized protein. (345 aa)
LOC102186008Uncharacterized protein. (312 aa)
MAGOHUncharacterized protein. (146 aa)
LOC102187480SLBP_RNA_bind domain-containing protein. (147 aa)
THOC1THO complex 1. (657 aa)
ENSCHIP00000014201Uncharacterized protein. (61 aa)
ENSCHIP00000013274Sm domain-containing protein. (87 aa)
SRRM1Serine and arginine repetitive matrix 1. (927 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
ENSCHIP00000013060RRM domain-containing protein. (295 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (684 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
ENSCHIP00000011658Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (79 aa)
THOC6THO complex 6. (341 aa)
SREK1RRM domain-containing protein. (414 aa)
SARNPSAP domain containing ribonucleoprotein. (196 aa)
U2AF1Uncharacterized protein. (237 aa)
ENSCHIP00000009900Uncharacterized protein. (130 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
WDR25WD repeat domain 25. (557 aa)
PABPN1BCL2L2-PABPN1 readthrough. (306 aa)
ZC3H11AUncharacterized protein. (786 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
ENSCHIP00000008188Uncharacterized protein. (399 aa)
SRSF1Uncharacterized protein. (248 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (588 aa)
ENSCHIP00000006634Uncharacterized protein. (132 aa)
ENSCHIP00000006395PAP_central domain-containing protein. (68 aa)
ENSCHIP00000005868Sm domain-containing protein. (52 aa)
ENSCHIP00000005826Uncharacterized protein. (327 aa)
SRSF3RRM domain-containing protein. (124 aa)
ZNF473Zinc finger protein 473. (853 aa)
LSM10LSM10, U7 small nuclear RNA associated. (122 aa)
ENSCHIP00000005232Lactamase_B domain-containing protein. (114 aa)
ENSCHIP00000005003Uncharacterized protein. (345 aa)
ENSCHIP00000004875Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
ENSCHIP00000003874Uncharacterized protein. (280 aa)
TPRG1LTumor protein p63 regulated 1 like. (277 aa)
CASC3CASC3 exon junction complex subunit. (700 aa)
ENSCHIP00000002186Uncharacterized protein. (123 aa)
TPRG1Tumor protein p63 regulated 1. (280 aa)
DDX39BDExD-box helicase 39B. (428 aa)
ENSCHIP00000002037Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
ENSCHIP00000001936Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
ZNF318Zinc finger protein 318. (2275 aa)
ENSCHIP00000001288Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
U2AF1L4Uncharacterized protein. (220 aa)
UPF3BSmg4_UPF3 domain-containing protein. (483 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
ENSCHIP00000021560RRM domain-containing protein. (109 aa)
NCBP2LNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
ZC3H13Zinc finger CCCH-type containing 13. (1647 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
POLDIP3DNA polymerase delta interacting protein 3. (421 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1685 aa)
SRRM1-2PWI domain-containing protein. (141 aa)
FYTTD1Uncharacterized protein. (318 aa)
THOC3THO complex 3. (351 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (153 aa)
SRSF4Serine and arginine rich splicing factor 4. (517 aa)
ENSCHIP00000026270Sm domain-containing protein. (62 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
ENSCHIP00000027702Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (68 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (426 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
CHTOPChromatin target of PRMT1. (249 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
SREK1-2RRM domain-containing protein. (100 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (739 aa)
SRSF9Serine and arginine rich splicing factor 9. (221 aa)
SRSF11Serine and arginine rich splicing factor 11. (429 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (231 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
LOC102179815Uncharacterized protein. (1577 aa)
FIP1L1Fip1 domain-containing protein. (568 aa)
THOC5THO complex 5. (694 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
SYMPKSymplekin. (1272 aa)
DHX38DEAH-box helicase 38. (1227 aa)
ENSCHIP00000033753RRM domain-containing protein. (290 aa)
MAGOHBUncharacterized protein. (148 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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