STRINGSTRING
ENSCHIP00000000670 ENSCHIP00000000670 H2BC12 H2BC12 LOC102180307 LOC102180307 POLB POLB H2AC6 H2AC6 ENSCHIP00000002654 ENSCHIP00000002654 LOC102181912 LOC102181912 LOC102175243 LOC102175243 APEX1 APEX1 POLE POLE LOC102183280 LOC102183280 VWA5B2 VWA5B2 H2AJ H2AJ LOC102182181 LOC102182181 H2BC18 H2BC18 LOC102172226 LOC102172226 ENSCHIP00000003936 ENSCHIP00000003936 UNG UNG ENSCHIP00000004152 ENSCHIP00000004152 ENSCHIP00000004308 ENSCHIP00000004308 LOC102179187 LOC102179187 H2BC1 H2BC1 RFC2 RFC2 NEIL3 NEIL3 FEN1 FEN1 H2BC15 H2BC15 H2BU1 H2BU1 ENSCHIP00000005277 ENSCHIP00000005277 POLD2 POLD2 LOC102172954 LOC102172954 MBD4 MBD4 LOC102180845 LOC102180845 ENSCHIP00000005753 ENSCHIP00000005753 SMUG1 SMUG1 H2BC6 H2BC6 LOC108633414 LOC108633414 LOC106503502 LOC106503502 LOC102171676 LOC102171676 LOC108636047 LOC108636047 LOC106503503 LOC106503503 LOC102185323 LOC102185323 H2BC3 H2BC3 H2BC11 H2BC11 MUTYH MUTYH MPG MPG ENSCHIP00000008191 ENSCHIP00000008191 LOC102180587 LOC102180587 LOC102188481 LOC102188481 ADPRHL2 ADPRHL2 ENSCHIP00000008488 ENSCHIP00000008488 POLD4 POLD4 TERF1 TERF1 ENSCHIP00000009147 ENSCHIP00000009147 ENSCHIP00000009163 ENSCHIP00000009163 ENSCHIP00000009200 ENSCHIP00000009200 ENSCHIP00000009386 ENSCHIP00000009386 REC114 REC114 RCBTB2 RCBTB2 RFC3 RFC3 H2BE1 H2BE1 H2BC21 H2BC21 RCBTB1 RCBTB1 LOC102184017 LOC102184017 ENSCHIP00000011074 ENSCHIP00000011074 MEIOB MEIOB LOC102172676 LOC102172676 ENSCHIP00000012960 ENSCHIP00000012960 NTHL1 NTHL1 POT1 POT1 TDG TDG PARG PARG PCNA PCNA PARP3 PARP3 ENSCHIP00000016741 ENSCHIP00000016741 ATAD5 ATAD5 RFC5 RFC5 PARP1 PARP1 LOC102183306 LOC102183306 POLD1 POLD1 RPA2 RPA2 VWA5A VWA5A APEX2 APEX2 RFC1 RFC1 POLE3 POLE3 XRCC1 XRCC1 RFC4 RFC4 TERF2IP TERF2IP ENSCHIP00000025553 ENSCHIP00000025553 NEIL1 NEIL1 OGG1 OGG1 ENSCHIP00000026297 ENSCHIP00000026297 H2AZ2 H2AZ2 RPA3 RPA3 TINF2 TINF2 PNKP PNKP POLD3 POLD3 VWA5B1 VWA5B1 POLE4 POLE4 POLE2 POLE2 LIG3 LIG3 ENSCHIP00000029134 ENSCHIP00000029134 TERF2 TERF2 PARP2 PARP2 NEIL2 NEIL2 ACD ACD RPA1 RPA1 LIG1 LIG1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSCHIP00000000670DNA_pol_B_thumb domain-containing protein. (54 aa)
H2BC12Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC102180307Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
H2AC6Histone H2A; Belongs to the histone H2A family. (130 aa)
ENSCHIP00000002654Uncharacterized protein. (121 aa)
LOC102181912Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC102175243Histone domain-containing protein; Belongs to the histone H2B family. (122 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2281 aa)
LOC102183280Histone H2B type 1. (126 aa)
VWA5B2Von Willebrand factor A domain containing 5B2. (1254 aa)
H2AJHistone H2A; Belongs to the histone H2A family. (129 aa)
LOC102182181Histone H2B type 1. (126 aa)
H2BC18Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC102172226Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
ENSCHIP00000003936Histone H2A; Belongs to the histone H2A family. (143 aa)
UNGUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. (311 aa)
ENSCHIP00000004152annotation not available (103 aa)
ENSCHIP00000004308annotation not available (103 aa)
LOC102179187Histone H2B; Belongs to the histone H2B family. (126 aa)
H2BC1Histone H2B; Belongs to the histone H2B family. (127 aa)
RFC2Replication factor C subunit 2. (352 aa)
NEIL3Nei like DNA glycosylase 3. (606 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
H2BC15Histone H2B; Belongs to the histone H2B family. (126 aa)
H2BU1Histone H2B; Belongs to the histone H2B family. (126 aa)
ENSCHIP00000005277annotation not available (103 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
LOC102172954Histone H4. (103 aa)
MBD4Methyl-CpG-binding domain protein 4; Mismatch-specific DNA N-glycosylase involved in DNA repair. Has thymine glycosylase activity and is specific for G:T mismatches within methylated and unmethylated CpG sites. Can also remove uracil or 5-fluorouracil in G:U mismatches. Has no lyase activity. Was first identified as methyl-CpG-binding protein. (554 aa)
LOC102180845Histone H2B type 1. (126 aa)
ENSCHIP00000005753annotation not available (103 aa)
SMUG1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (324 aa)
H2BC6Histone H2B type 1. (126 aa)
LOC108633414Histone H2B type 1. (126 aa)
LOC106503502Histone H4. (103 aa)
LOC102171676Histone H2A; Belongs to the histone H2A family. (129 aa)
LOC108636047Histone H4. (103 aa)
LOC106503503Histone H4. (103 aa)
LOC102185323Histone H2B type 1. (126 aa)
H2BC3Histone H2B; Belongs to the histone H2B family. (126 aa)
H2BC11Histone H2B; Belongs to the histone H2B family. (126 aa)
MUTYHAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (605 aa)
MPGN-methylpurine DNA glycosylase. (371 aa)
ENSCHIP00000008191Histone H2A; Belongs to the histone H2A family. (109 aa)
LOC102180587Histone H2B type 1. (126 aa)
LOC102188481Uncharacterized protein. (379 aa)
ADPRHL2ADP-ribosylhydrolase like 2. (368 aa)
ENSCHIP00000008488annotation not available (103 aa)
POLD4Uncharacterized protein. (132 aa)
TERF1Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (436 aa)
ENSCHIP00000009147annotation not available (103 aa)
ENSCHIP00000009163Uncharacterized protein. (122 aa)
ENSCHIP00000009200annotation not available (103 aa)
ENSCHIP00000009386Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
REC114REC114 meiotic recombination protein. (252 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
RFC3Replication factor C subunit 3. (356 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (122 aa)
H2BC21Histone H2B; Belongs to the histone H2B family. (126 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
LOC102184017Histone H2B type 1. (126 aa)
ENSCHIP00000011074annotation not available (103 aa)
MEIOBMeiosis specific with OB-fold. (467 aa)
LOC102172676Histone H2B type 2-E-like. (126 aa)
ENSCHIP00000012960DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (287 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (313 aa)
POT1Protection of telomeres 1. (785 aa)
TDGThymine DNA glycosylase. (403 aa)
PARGPoly(ADP-ribose) glycohydrolase. (972 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
PARP3Poly [ADP-ribose] polymerase. (525 aa)
ENSCHIP00000016741Histone H2A; Belongs to the histone H2A family. (140 aa)
ATAD5ATPase family AAA domain containing 5. (1894 aa)
RFC5Replication factor C subunit 5. (339 aa)
PARP1Poly [ADP-ribose] polymerase. (1020 aa)
LOC102183306Histone H2A; Belongs to the histone H2A family. (128 aa)
POLD1DNA polymerase. (1115 aa)
RPA2Replication protein A2. (270 aa)
VWA5AVon Willebrand factor A domain containing 5A. (783 aa)
APEX2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (514 aa)
RFC1Replication factor C subunit 1. (1143 aa)
POLE3CBFD_NFYB_HMF domain-containing protein. (147 aa)
XRCC1X-ray repair cross complementing 1. (632 aa)
RFC4Replication factor C subunit 4. (364 aa)
TERF2IPUncharacterized protein. (400 aa)
ENSCHIP00000025553annotation not available (143 aa)
NEIL1Nei like DNA glycosylase 1. (390 aa)
OGG18-oxoguanine DNA glycosylase. (345 aa)
ENSCHIP00000026297Histone domain-containing protein; Belongs to the histone H2B family. (112 aa)
H2AZ2Histone H2A; Belongs to the histone H2A family. (127 aa)
RPA3Uncharacterized protein. (121 aa)
TINF2TERF1 interacting nuclear factor 2. (458 aa)
PNKPPolynucleotide kinase 3'-phosphatase. (522 aa)
POLD3Uncharacterized protein. (464 aa)
VWA5B1Von Willebrand factor A domain containing 5B1. (1183 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (131 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (518 aa)
LIG3DNA ligase. (1004 aa)
ENSCHIP00000029134Uncharacterized protein. (95 aa)
TERF2Telomeric repeat binding factor 2. (543 aa)
PARP2Poly [ADP-ribose] polymerase. (533 aa)
NEIL2Nei like DNA glycosylase 2. (336 aa)
ACDACD shelterin complex subunit and telomerase recruitment factor. (458 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (617 aa)
LIG1DNA ligase. (915 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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