16 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HGD	Homogentisate 1,2-dioxygenase. (445 aa)
	ASRGL1	Asparaginase and isoaspartyl peptidase 1. (309 aa)
	GSTZ1	Glutathione S-transferase zeta 1; Belongs to the GST superfamily. (210 aa)
	TASP1	Taspase 1. (438 aa)
	PCBD2	Pterin-4 alpha-carbinolamine dehydratase 2. (130 aa)
	ENSCHIP00000024573	Uncharacterized protein. (60 aa)
	PCBD1	Pterin-4 alpha-carbinolamine dehydratase 1. (104 aa)
	LOC102183203	Amine oxidase. (517 aa)
	KYAT3	Kynurenine aminotransferase 3. (476 aa)
	TAT	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (447 aa)
	PAH	Phenylalanine hydroxylase. (466 aa)
	KYAT1	Aminotran_1_2 domain-containing protein. (425 aa)
	IL4I1	Interleukin 4 induced 1. (582 aa)
	FAH	Fumarylacetoacetase. (419 aa)
	QDPR	Quinoid dihydropteridine reductase. (242 aa)
	HPD	4-hydroxyphenylpyruvate dioxygenase. (389 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASRGL1	IL4I1	ENSCHIP00000029930	ENSCHIP00000012465	Asparaginase and isoaspartyl peptidase 1.	Interleukin 4 induced 1.	0.900
ASRGL1	LOC102183203	ENSCHIP00000029930	ENSCHIP00000023188	Asparaginase and isoaspartyl peptidase 1.	Amine oxidase.	0.900
ENSCHIP00000024573	HGD	ENSCHIP00000024573	ENSCHIP00000032682	Uncharacterized protein.	Homogentisate 1,2-dioxygenase.	0.589
ENSCHIP00000024573	HPD	ENSCHIP00000024573	ENSCHIP00000003214	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.402
ENSCHIP00000024573	PAH	ENSCHIP00000024573	ENSCHIP00000018855	Uncharacterized protein.	Phenylalanine hydroxylase.	0.746
ENSCHIP00000024573	QDPR	ENSCHIP00000024573	ENSCHIP00000006722	Uncharacterized protein.	Quinoid dihydropteridine reductase.	0.549
FAH	GSTZ1	ENSCHIP00000010208	ENSCHIP00000029006	Fumarylacetoacetase.	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	0.920
FAH	HGD	ENSCHIP00000010208	ENSCHIP00000032682	Fumarylacetoacetase.	Homogentisate 1,2-dioxygenase.	0.924
FAH	HPD	ENSCHIP00000010208	ENSCHIP00000003214	Fumarylacetoacetase.	4-hydroxyphenylpyruvate dioxygenase.	0.924
FAH	PAH	ENSCHIP00000010208	ENSCHIP00000018855	Fumarylacetoacetase.	Phenylalanine hydroxylase.	0.628
FAH	TAT	ENSCHIP00000010208	ENSCHIP00000019362	Fumarylacetoacetase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.818
GSTZ1	FAH	ENSCHIP00000029006	ENSCHIP00000010208	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	Fumarylacetoacetase.	0.920
GSTZ1	HGD	ENSCHIP00000029006	ENSCHIP00000032682	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	Homogentisate 1,2-dioxygenase.	0.944
GSTZ1	HPD	ENSCHIP00000029006	ENSCHIP00000003214	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	4-hydroxyphenylpyruvate dioxygenase.	0.473
GSTZ1	PAH	ENSCHIP00000029006	ENSCHIP00000018855	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	Phenylalanine hydroxylase.	0.425
GSTZ1	TAT	ENSCHIP00000029006	ENSCHIP00000019362	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.441
HGD	ENSCHIP00000024573	ENSCHIP00000032682	ENSCHIP00000024573	Homogentisate 1,2-dioxygenase.	Uncharacterized protein.	0.589
HGD	FAH	ENSCHIP00000032682	ENSCHIP00000010208	Homogentisate 1,2-dioxygenase.	Fumarylacetoacetase.	0.924
HGD	GSTZ1	ENSCHIP00000032682	ENSCHIP00000029006	Homogentisate 1,2-dioxygenase.	Glutathione S-transferase zeta 1; Belongs to the GST superfamily.	0.944
HGD	HPD	ENSCHIP00000032682	ENSCHIP00000003214	Homogentisate 1,2-dioxygenase.	4-hydroxyphenylpyruvate dioxygenase.	0.996