14 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PXDN	Peroxidasin. (1525 aa)
	WASL	WASP like actin nucleation promoting factor. (505 aa)
	SH3PXD2B	SH3 and PX domains 2B. (928 aa)
	MMP9	Uncharacterized protein. (709 aa)
	TYR	Tyrosinase. (530 aa)
	ADAM19	ADAM metallopeptidase domain 19. (926 aa)
	ADAM15	ADAM metallopeptidase domain 15. (866 aa)
	SRC	Tyrosine-protein kinase. (538 aa)
	MMP14	ZnMc domain-containing protein. (584 aa)
	FGF18	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (207 aa)
	ADAM12	ADAM metallopeptidase domain 12. (903 aa)
	SH3PXD2A	SH3 and PX domains 2A. (1120 aa)
	ACTB	Uncharacterized protein. (375 aa)
	TNFSF11	Tumor necrosis factor ligand superfamily member. (316 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	FGF18	ENSCHIP00000011080	ENSCHIP00000008198	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.534
ACTB	MMP14	ENSCHIP00000011080	ENSCHIP00000007636	Uncharacterized protein.	ZnMc domain-containing protein.	0.543
ACTB	MMP9	ENSCHIP00000011080	ENSCHIP00000016938	Uncharacterized protein.	Uncharacterized protein.	0.881
ACTB	PXDN	ENSCHIP00000011080	ENSCHIP00000015493	Uncharacterized protein.	Peroxidasin.	0.962
ACTB	SRC	ENSCHIP00000011080	ENSCHIP00000002619	Uncharacterized protein.	Tyrosine-protein kinase.	0.859
ACTB	TYR	ENSCHIP00000011080	ENSCHIP00000002184	Uncharacterized protein.	Tyrosinase.	0.665
ACTB	WASL	ENSCHIP00000011080	ENSCHIP00000015768	Uncharacterized protein.	WASP like actin nucleation promoting factor.	0.967
ADAM12	MMP14	ENSCHIP00000008349	ENSCHIP00000007636	ADAM metallopeptidase domain 12.	ZnMc domain-containing protein.	0.473
ADAM12	MMP9	ENSCHIP00000008349	ENSCHIP00000016938	ADAM metallopeptidase domain 12.	Uncharacterized protein.	0.622
ADAM12	SH3PXD2A	ENSCHIP00000008349	ENSCHIP00000009768	ADAM metallopeptidase domain 12.	SH3 and PX domains 2A.	0.675
ADAM12	SH3PXD2B	ENSCHIP00000008349	ENSCHIP00000017455	ADAM metallopeptidase domain 12.	SH3 and PX domains 2B.	0.411
ADAM15	MMP14	ENSCHIP00000002553	ENSCHIP00000007636	ADAM metallopeptidase domain 15.	ZnMc domain-containing protein.	0.483
ADAM15	SH3PXD2A	ENSCHIP00000002553	ENSCHIP00000009768	ADAM metallopeptidase domain 15.	SH3 and PX domains 2A.	0.678
ADAM15	SH3PXD2B	ENSCHIP00000002553	ENSCHIP00000017455	ADAM metallopeptidase domain 15.	SH3 and PX domains 2B.	0.632
ADAM15	SRC	ENSCHIP00000002553	ENSCHIP00000002619	ADAM metallopeptidase domain 15.	Tyrosine-protein kinase.	0.425
ADAM19	SH3PXD2A	ENSCHIP00000002393	ENSCHIP00000009768	ADAM metallopeptidase domain 19.	SH3 and PX domains 2A.	0.678
ADAM19	SH3PXD2B	ENSCHIP00000002393	ENSCHIP00000017455	ADAM metallopeptidase domain 19.	SH3 and PX domains 2B.	0.431
FGF18	ACTB	ENSCHIP00000008198	ENSCHIP00000011080	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.534
FGF18	MMP9	ENSCHIP00000008198	ENSCHIP00000016938	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Uncharacterized protein.	0.496
FGF18	PXDN	ENSCHIP00000008198	ENSCHIP00000015493	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Peroxidasin.	0.517