8 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NDUFS3	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family. (266 aa)
	ATP5F1B	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (528 aa)
	ACTB	Uncharacterized protein. (375 aa)
	PKM	Pyruvate kinase; Belongs to the pyruvate kinase family. (531 aa)
	ATP5MC1	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family. (136 aa)
	ATP5MC3	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family. (141 aa)
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (120 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	ATP5F1B	ENSCHIP00000011080	ENSCHIP00000007152	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.633
ACTB	GAPDH	ENSCHIP00000011080	ENSCHIP00000025974	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.979
ACTB	PKM	ENSCHIP00000011080	ENSCHIP00000015417	Uncharacterized protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.744
ATP5F1B	ACTB	ENSCHIP00000007152	ENSCHIP00000011080	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.633
ATP5F1B	ATP5MC1	ENSCHIP00000007152	ENSCHIP00000016738	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.998
ATP5F1B	ATP5MC3	ENSCHIP00000007152	ENSCHIP00000018717	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.998
ATP5F1B	GAPDH	ENSCHIP00000007152	ENSCHIP00000025974	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Glyceraldehyde-3-phosphate dehydrogenase.	0.747
ATP5F1B	NDUFC2	ENSCHIP00000007152	ENSCHIP00000030092	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.635
ATP5F1B	NDUFS3	ENSCHIP00000007152	ENSCHIP00000018277	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.816
ATP5F1B	PKM	ENSCHIP00000007152	ENSCHIP00000015417	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.567
ATP5MC1	ATP5F1B	ENSCHIP00000016738	ENSCHIP00000007152	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
ATP5MC1	ATP5MC3	ENSCHIP00000016738	ENSCHIP00000018717	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.999
ATP5MC1	NDUFC2	ENSCHIP00000016738	ENSCHIP00000030092	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.655
ATP5MC1	NDUFS3	ENSCHIP00000016738	ENSCHIP00000018277	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.878
ATP5MC3	ATP5F1B	ENSCHIP00000018717	ENSCHIP00000007152	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
ATP5MC3	ATP5MC1	ENSCHIP00000018717	ENSCHIP00000016738	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.999
ATP5MC3	NDUFC2	ENSCHIP00000018717	ENSCHIP00000030092	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.680
ATP5MC3	NDUFS3	ENSCHIP00000018717	ENSCHIP00000018277	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.666
GAPDH	ACTB	ENSCHIP00000025974	ENSCHIP00000011080	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.979
GAPDH	ATP5F1B	ENSCHIP00000025974	ENSCHIP00000007152	Glyceraldehyde-3-phosphate dehydrogenase.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.747