(6 nodes) (2015) Three distinct ribosome assemblies modulated by translation are the building blocks of polysomes. network (Capra hircus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL38	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (69 aa)
	RPS6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (255 aa)
	EIF4B	RRM domain-containing protein. (615 aa)
	EIF4E	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
	MTOR	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family. (2550 aa)
	RPL26	Ribosomal protein L26. (145 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4B	EIF4E	ENSCHIP00000009582	ENSCHIP00000005408	RRM domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.998
EIF4B	MTOR	ENSCHIP00000009582	ENSCHIP00000021872	RRM domain-containing protein.	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	0.424
EIF4B	RPS6	ENSCHIP00000009582	ENSCHIP00000006669	RRM domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.970
EIF4E	EIF4B	ENSCHIP00000005408	ENSCHIP00000009582	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	RRM domain-containing protein.	0.998
EIF4E	MTOR	ENSCHIP00000005408	ENSCHIP00000021872	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	0.922
EIF4E	RPS6	ENSCHIP00000005408	ENSCHIP00000006669	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.910
MTOR	EIF4B	ENSCHIP00000021872	ENSCHIP00000009582	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	RRM domain-containing protein.	0.424
MTOR	EIF4E	ENSCHIP00000021872	ENSCHIP00000005408	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.922
MTOR	RPS6	ENSCHIP00000021872	ENSCHIP00000006669	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.888
RPL26	RPL38	ENSCHIP00000030489	ENSCHIP00000033269	Ribosomal protein L26.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.940
RPL26	RPS6	ENSCHIP00000030489	ENSCHIP00000006669	Ribosomal protein L26.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.881
RPL38	RPL26	ENSCHIP00000033269	ENSCHIP00000030489	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L26.	0.940
RPL38	RPS6	ENSCHIP00000033269	ENSCHIP00000006669	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.727
RPS6	EIF4B	ENSCHIP00000006669	ENSCHIP00000009582	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	RRM domain-containing protein.	0.970
RPS6	EIF4E	ENSCHIP00000006669	ENSCHIP00000005408	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.910
RPS6	MTOR	ENSCHIP00000006669	ENSCHIP00000021872	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.	0.888
RPS6	RPL26	ENSCHIP00000006669	ENSCHIP00000030489	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Ribosomal protein L26.	0.881
RPS6	RPL38	ENSCHIP00000006669	ENSCHIP00000033269	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.727