30 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NTRK2	Tyrosine-protein kinase receptor. (837 aa)
	PSAT1	Phosphoserine aminotransferase. (370 aa)
	PRKACB	Protein kinase cAMP-activated catalytic subunit beta; Belongs to the protein kinase superfamily. (397 aa)
	PVALB	Parvalbumin; Belongs to the parvalbumin family. (111 aa)
	DLX2	Distal-less homeobox 2. (328 aa)
	CSGALNACT1	Hexosyltransferase. (524 aa)
	FOS	Fos proto-oncogene, AP-1 transcription factor subunit. (380 aa)
	KCNK1	Potassium channel subfamily K member. (336 aa)
	DDX6	DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
	PPP1R1B	Uncharacterized protein. (206 aa)
	KCNA1	Potassium voltage-gated channel subfamily A member 1; Belongs to the potassium channel family. (495 aa)
	FOSB	FosB proto-oncogene, AP-1 transcription factor subunit. (341 aa)
	JUN	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (335 aa)
	PSPH	Phosphoserine phosphatase. (225 aa)
	OTX2	Homeobox domain-containing protein. (289 aa)
	IGFBP5	Insulin-like growth factor binding protein 5. (272 aa)
	EMX1	Empty spiracles homeobox 1. (288 aa)
	ETV1	ETS variant 1. (477 aa)
	PRKACA	Protein kinase cAMP-activated catalytic subunit alpha; Belongs to the protein kinase superfamily. (360 aa)
	CLOCK	Clock circadian regulator. (845 aa)
	GRIN2A	Glutamate ionotropic receptor NMDA type subunit 2A. (1402 aa)
	OTX1	Orthodenticle homeobox 1. (355 aa)
	PHGDH	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (533 aa)
	NPAS4	Neuronal PAS domain protein 4. (801 aa)
	OXR1	Oxidation resistance 1. (842 aa)
	GAD2	Glutamate decarboxylase 2. (585 aa)
	FOXG1	Forkhead box G1. (538 aa)
	GRIN2B	Glutamate ionotropic receptor NMDA type subunit 2B. (1497 aa)
	ADCY5	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1259 aa)
	PAX6	Paired box 6. (486 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCY5	PPP1R1B	ENSCHIP00000026715	ENSCHIP00000033884	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Uncharacterized protein.	0.430
ADCY5	PRKACA	ENSCHIP00000026715	ENSCHIP00000016231	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Protein kinase cAMP-activated catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.938
ADCY5	PRKACB	ENSCHIP00000026715	ENSCHIP00000029151	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Protein kinase cAMP-activated catalytic subunit beta; Belongs to the protein kinase superfamily.	0.942
CLOCK	NPAS4	ENSCHIP00000016977	ENSCHIP00000021680	Clock circadian regulator.	Neuronal PAS domain protein 4.	0.727
DLX2	EMX1	ENSCHIP00000029902	ENSCHIP00000008644	Distal-less homeobox 2.	Empty spiracles homeobox 1.	0.456
DLX2	FOXG1	ENSCHIP00000029902	ENSCHIP00000026000	Distal-less homeobox 2.	Forkhead box G1.	0.758
DLX2	GAD2	ENSCHIP00000029902	ENSCHIP00000023476	Distal-less homeobox 2.	Glutamate decarboxylase 2.	0.779
DLX2	PAX6	ENSCHIP00000029902	ENSCHIP00000027464	Distal-less homeobox 2.	Paired box 6.	0.501
DLX2	PVALB	ENSCHIP00000029902	ENSCHIP00000029682	Distal-less homeobox 2.	Parvalbumin; Belongs to the parvalbumin family.	0.660
EMX1	DLX2	ENSCHIP00000008644	ENSCHIP00000029902	Empty spiracles homeobox 1.	Distal-less homeobox 2.	0.456
EMX1	FOXG1	ENSCHIP00000008644	ENSCHIP00000026000	Empty spiracles homeobox 1.	Forkhead box G1.	0.835
EMX1	GAD2	ENSCHIP00000008644	ENSCHIP00000023476	Empty spiracles homeobox 1.	Glutamate decarboxylase 2.	0.569
EMX1	GRIN2B	ENSCHIP00000008644	ENSCHIP00000026056	Empty spiracles homeobox 1.	Glutamate ionotropic receptor NMDA type subunit 2B.	0.449
EMX1	PAX6	ENSCHIP00000008644	ENSCHIP00000027464	Empty spiracles homeobox 1.	Paired box 6.	0.475
EMX1	PVALB	ENSCHIP00000008644	ENSCHIP00000029682	Empty spiracles homeobox 1.	Parvalbumin; Belongs to the parvalbumin family.	0.722
FOS	FOSB	ENSCHIP00000030757	ENSCHIP00000001624	Fos proto-oncogene, AP-1 transcription factor subunit.	FosB proto-oncogene, AP-1 transcription factor subunit.	0.997
FOS	GAD2	ENSCHIP00000030757	ENSCHIP00000023476	Fos proto-oncogene, AP-1 transcription factor subunit.	Glutamate decarboxylase 2.	0.497
FOS	JUN	ENSCHIP00000030757	ENSCHIP00000001903	Fos proto-oncogene, AP-1 transcription factor subunit.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.999
FOS	NPAS4	ENSCHIP00000030757	ENSCHIP00000021680	Fos proto-oncogene, AP-1 transcription factor subunit.	Neuronal PAS domain protein 4.	0.777
FOS	OXR1	ENSCHIP00000030757	ENSCHIP00000022416	Fos proto-oncogene, AP-1 transcription factor subunit.	Oxidation resistance 1.	0.546