16 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	RNASEH1	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (285 aa)
	BRCA2	BRCA2 DNA repair associated. (3405 aa)
	LOC106502806	Uncharacterized protein. (616 aa)
	SETX	Senataxin. (2659 aa)
	SF3B3	Splicing factor 3b subunit 3. (1217 aa)
	ALB	Serum albumin. (608 aa)
	DHX9	DExH-box helicase 9. (1271 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	ACTB	Uncharacterized protein. (375 aa)
	NCL	Uncharacterized protein. (667 aa)
	SRSF1	Uncharacterized protein. (248 aa)
	XRN2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (961 aa)
	AQR	RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1471 aa)
	CDK9	Cyclin dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)
	SFPQ	Splicing factor proline and glutamine rich. (711 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	ALB	ENSCHIP00000011080	ENSCHIP00000020234	Uncharacterized protein.	Serum albumin.	0.961
ACTB	BRCA2	ENSCHIP00000011080	ENSCHIP00000024039	Uncharacterized protein.	BRCA2 DNA repair associated.	0.617
ACTB	CDK9	ENSCHIP00000011080	ENSCHIP00000029772	Uncharacterized protein.	Cyclin dependent kinase 9; Belongs to the protein kinase superfamily.	0.525
ACTB	GAPDH	ENSCHIP00000011080	ENSCHIP00000025974	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.979
ACTB	LOC106502806	ENSCHIP00000011080	ENSCHIP00000023515	Uncharacterized protein.	Uncharacterized protein.	0.608
ACTB	NCL	ENSCHIP00000011080	ENSCHIP00000007425	Uncharacterized protein.	Uncharacterized protein.	0.608
ALB	ACTB	ENSCHIP00000020234	ENSCHIP00000011080	Serum albumin.	Uncharacterized protein.	0.961
ALB	BRCA2	ENSCHIP00000020234	ENSCHIP00000024039	Serum albumin.	BRCA2 DNA repair associated.	0.503
ALB	GAPDH	ENSCHIP00000020234	ENSCHIP00000025974	Serum albumin.	Glyceraldehyde-3-phosphate dehydrogenase.	0.948
ALB	LOC106502806	ENSCHIP00000020234	ENSCHIP00000023515	Serum albumin.	Uncharacterized protein.	0.663
ALB	NCL	ENSCHIP00000020234	ENSCHIP00000007425	Serum albumin.	Uncharacterized protein.	0.665
AQR	RNASEH1	ENSCHIP00000030799	ENSCHIP00000025542	RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.619
AQR	SF3B3	ENSCHIP00000030799	ENSCHIP00000021519	RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.	Splicing factor 3b subunit 3.	0.859
AQR	SNRPN	ENSCHIP00000030799	ENSCHIP00000017774	RNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.	Small nuclear ribonucleoprotein-associated protein.	0.559
BRCA2	ACTB	ENSCHIP00000024039	ENSCHIP00000011080	BRCA2 DNA repair associated.	Uncharacterized protein.	0.617
BRCA2	ALB	ENSCHIP00000024039	ENSCHIP00000020234	BRCA2 DNA repair associated.	Serum albumin.	0.503
BRCA2	GAPDH	ENSCHIP00000024039	ENSCHIP00000025974	BRCA2 DNA repair associated.	Glyceraldehyde-3-phosphate dehydrogenase.	0.641
BRCA2	RNASEH1	ENSCHIP00000024039	ENSCHIP00000025542	BRCA2 DNA repair associated.	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.552
BRCA2	SETX	ENSCHIP00000024039	ENSCHIP00000022951	BRCA2 DNA repair associated.	Senataxin.	0.559
CDK9	ACTB	ENSCHIP00000029772	ENSCHIP00000011080	Cyclin dependent kinase 9; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.525