STRINGSTRING
RAD18 RAD18 RAD52 RAD52 PALB2 PALB2 H2AX H2AX TRIP12 TRIP12 SLF1 SLF1 PCNA PCNA SLX4 SLX4 SMC5 SMC5 ALB ALB UBR5 UBR5 BRCA2 BRCA2 RNF168 RNF168 POLD3 POLD3 MUS81 MUS81 FANCD2 FANCD2 BRCA1 BRCA1 RAD51 RAD51
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RAD18RAD18 E3 ubiquitin protein ligase. (502 aa)
RAD52RAD52 homolog, DNA repair protein. (416 aa)
PALB2Partner and localizer of BRCA2. (1194 aa)
H2AXHistone H2A; Belongs to the histone H2A family. (143 aa)
TRIP12Thyroid hormone receptor interactor 12. (2067 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1056 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1752 aa)
SMC5AAA_23 domain-containing protein. (1104 aa)
ALBSerum albumin. (608 aa)
UBR5Ubiquitin protein ligase E3 component n-recognin 5. (2801 aa)
BRCA2BRCA2 DNA repair associated. (3405 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] (573 aa)
POLD3Uncharacterized protein. (464 aa)
MUS81MUS81 structure-specific endonuclease subunit. (552 aa)
FANCD2FA complementation group D2. (1423 aa)
BRCA1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1843 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
Your Current Organism:
Capra hircus
NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats
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