14 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRPF19	Pre-mRNA processing factor 19. (504 aa)
	ROM1	Retinal outer segment membrane protein 1. (349 aa)
	EFTUD2	Elongation factor Tu GTP binding domain containing 2. (972 aa)
	GPKOW	G-patch domain and KOW motifs. (478 aa)
	DHX16	DEAH-box helicase 16. (1058 aa)
	SLU7	SLU7 homolog, splicing factor. (586 aa)
	CWC25	CWC25 spliceosome associated protein homolog. (425 aa)
	PXDN	Peroxidasin. (1525 aa)
	YJU2	Uncharacterized protein. (320 aa)
	PRPF8	Pre-mRNA processing factor 8. (2335 aa)
	LDH-A	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (361 aa)
	RHO	Rhodopsin. (348 aa)
	PRPF31	Pre-mRNA processing factor 31. (499 aa)
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CWC25	DHX16	ENSCHIP00000013770	ENSCHIP00000011093	CWC25 spliceosome associated protein homolog.	DEAH-box helicase 16.	0.877
CWC25	EFTUD2	ENSCHIP00000013770	ENSCHIP00000008416	CWC25 spliceosome associated protein homolog.	Elongation factor Tu GTP binding domain containing 2.	0.935
CWC25	GPKOW	ENSCHIP00000013770	ENSCHIP00000010949	CWC25 spliceosome associated protein homolog.	G-patch domain and KOW motifs.	0.779
CWC25	PRPF19	ENSCHIP00000013770	ENSCHIP00000019231	CWC25 spliceosome associated protein homolog.	Pre-mRNA processing factor 19.	0.968
CWC25	PRPF31	ENSCHIP00000013770	ENSCHIP00000023466	CWC25 spliceosome associated protein homolog.	Pre-mRNA processing factor 31.	0.449
CWC25	PRPF8	ENSCHIP00000013770	ENSCHIP00000017874	CWC25 spliceosome associated protein homolog.	Pre-mRNA processing factor 8.	0.968
CWC25	SLU7	ENSCHIP00000013770	ENSCHIP00000011757	CWC25 spliceosome associated protein homolog.	SLU7 homolog, splicing factor.	0.978
CWC25	YJU2	ENSCHIP00000013770	ENSCHIP00000016936	CWC25 spliceosome associated protein homolog.	Uncharacterized protein.	0.996
DHX16	CWC25	ENSCHIP00000011093	ENSCHIP00000013770	DEAH-box helicase 16.	CWC25 spliceosome associated protein homolog.	0.877
DHX16	EFTUD2	ENSCHIP00000011093	ENSCHIP00000008416	DEAH-box helicase 16.	Elongation factor Tu GTP binding domain containing 2.	0.980
DHX16	GPKOW	ENSCHIP00000011093	ENSCHIP00000010949	DEAH-box helicase 16.	G-patch domain and KOW motifs.	0.999
DHX16	PRPF19	ENSCHIP00000011093	ENSCHIP00000019231	DEAH-box helicase 16.	Pre-mRNA processing factor 19.	0.962
DHX16	PRPF31	ENSCHIP00000011093	ENSCHIP00000023466	DEAH-box helicase 16.	Pre-mRNA processing factor 31.	0.752
DHX16	PRPF8	ENSCHIP00000011093	ENSCHIP00000017874	DEAH-box helicase 16.	Pre-mRNA processing factor 8.	0.981
DHX16	SLU7	ENSCHIP00000011093	ENSCHIP00000011757	DEAH-box helicase 16.	SLU7 homolog, splicing factor.	0.931
DHX16	YJU2	ENSCHIP00000011093	ENSCHIP00000016936	DEAH-box helicase 16.	Uncharacterized protein.	0.713
EFTUD2	CWC25	ENSCHIP00000008416	ENSCHIP00000013770	Elongation factor Tu GTP binding domain containing 2.	CWC25 spliceosome associated protein homolog.	0.935
EFTUD2	DHX16	ENSCHIP00000008416	ENSCHIP00000011093	Elongation factor Tu GTP binding domain containing 2.	DEAH-box helicase 16.	0.980
EFTUD2	GAPDH	ENSCHIP00000008416	ENSCHIP00000025974	Elongation factor Tu GTP binding domain containing 2.	Glyceraldehyde-3-phosphate dehydrogenase.	0.490
EFTUD2	GPKOW	ENSCHIP00000008416	ENSCHIP00000010949	Elongation factor Tu GTP binding domain containing 2.	G-patch domain and KOW motifs.	0.787