11 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TH	Tyrosine hydroxylase. (516 aa)
	FOS	Fos proto-oncogene, AP-1 transcription factor subunit. (380 aa)
	ALB	Serum albumin. (608 aa)
	ENSCHIP00000016659	Tr-type G domain-containing protein. (120 aa)
	LOC108636537	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (441 aa)
	EEF1A1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
	ACTB	Uncharacterized protein. (375 aa)
	PXDN	Peroxidasin. (1525 aa)
	EEF1A2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (463 aa)
	SYP	Synaptophysin. (313 aa)
	ENSCHIP00000003677	Tr-type G domain-containing protein. (438 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	ALB	ENSCHIP00000011080	ENSCHIP00000020234	Uncharacterized protein.	Serum albumin.	0.961
ACTB	EEF1A1	ENSCHIP00000011080	ENSCHIP00000006227	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.749
ACTB	EEF1A2	ENSCHIP00000011080	ENSCHIP00000016275	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.647
ACTB	ENSCHIP00000003677	ENSCHIP00000011080	ENSCHIP00000003677	Uncharacterized protein.	Tr-type G domain-containing protein.	0.664
ACTB	ENSCHIP00000016659	ENSCHIP00000011080	ENSCHIP00000016659	Uncharacterized protein.	Tr-type G domain-containing protein.	0.665
ACTB	FOS	ENSCHIP00000011080	ENSCHIP00000030757	Uncharacterized protein.	Fos proto-oncogene, AP-1 transcription factor subunit.	0.619
ACTB	LOC108636537	ENSCHIP00000011080	ENSCHIP00000003897	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.665
ACTB	PXDN	ENSCHIP00000011080	ENSCHIP00000015493	Uncharacterized protein.	Peroxidasin.	0.962
ACTB	SYP	ENSCHIP00000011080	ENSCHIP00000000611	Uncharacterized protein.	Synaptophysin.	0.795
ACTB	TH	ENSCHIP00000011080	ENSCHIP00000032072	Uncharacterized protein.	Tyrosine hydroxylase.	0.760
ALB	ACTB	ENSCHIP00000020234	ENSCHIP00000011080	Serum albumin.	Uncharacterized protein.	0.961
ALB	EEF1A1	ENSCHIP00000020234	ENSCHIP00000006227	Serum albumin.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.533
ALB	EEF1A2	ENSCHIP00000020234	ENSCHIP00000016275	Serum albumin.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.501
ALB	ENSCHIP00000003677	ENSCHIP00000020234	ENSCHIP00000003677	Serum albumin.	Tr-type G domain-containing protein.	0.489
ALB	ENSCHIP00000016659	ENSCHIP00000020234	ENSCHIP00000016659	Serum albumin.	Tr-type G domain-containing protein.	0.489
ALB	FOS	ENSCHIP00000020234	ENSCHIP00000030757	Serum albumin.	Fos proto-oncogene, AP-1 transcription factor subunit.	0.655
ALB	LOC108636537	ENSCHIP00000020234	ENSCHIP00000003897	Serum albumin.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.489
ALB	PXDN	ENSCHIP00000020234	ENSCHIP00000015493	Serum albumin.	Peroxidasin.	0.988
ALB	SYP	ENSCHIP00000020234	ENSCHIP00000000611	Serum albumin.	Synaptophysin.	0.880
ALB	TH	ENSCHIP00000020234	ENSCHIP00000032072	Serum albumin.	Tyrosine hydroxylase.	0.764